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P3

Euk-Vir

Panax_virus_Y

P3__YP_003725721__Panax_virus_Y__796352

Identity

Accession:
YP_003725721 ↗
Protein ID:
P3
Kingdom:
euk

Quality

84.5 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Panax_virus_Y

TaxID: 796352

Cluster

View cluster (66 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-199
PDB
Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13608.11 best Potyvirid-P3 111.3 9.10e-32 92.0% 33.9%
D2 medium residues 202-255
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y0mB00 6.10.250.2000 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 56.0 6.24e-01 88.9% 100.0%
D3 medium residues 303-346
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.76 55.0 3.53e-01 88.6% 17.5%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.85e-01 97.7% 66.7%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.63 49.0 3.61e-01 88.6% 96.0%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 53.0 3.51e-01 97.7% 90.6%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.62 50.0 4.28e-01 95.5% 78.7%
2af6A02 6.10.140.450 Special › Helix non-globular › Helix Hairpins › 0.60 45.0 4.11e-01 86.4% 59.7%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.60 38.0 3.55e-01 100.0% 50.0%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.60 50.0 3.34e-01 100.0% 55.3%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 40.0 2.51e-01 70.5% 11.3%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 45.0 3.17e-01 86.4% 46.0%
1kqpA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 50.0 3.10e-01 100.0% 62.0%
7wzwF01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.55 43.0 2.96e-01 100.0% 38.4%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.54 38.0 3.48e-01 97.7% 50.0%
4xllA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 38.0 2.65e-01 88.6% 74.5%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.51 40.0 2.75e-01 100.0% 93.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4404540 103.6.1.1 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.83 55.0 4.98e-01 70.5% 51.7%
5055246 103.6.1.1 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.82 55.0 4.34e-01 70.5% 34.8%
None — 0.82 55.0 3.52e-01 70.5% 15.9%
4217184 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.80 56.0 4.70e-01 75.0% 48.0%
3110 103.6.1.1 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.80 53.0 5.86e-01 70.5% 91.2%
4135996 103.6.1.1 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.79 53.0 4.80e-01 70.5% 51.7%
None — 0.76 51.0 3.33e-01 70.5% 16.3%
7431 235.1.1.13 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 0.76 55.0 3.53e-01 88.6% 17.7%
3973839 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.75 57.0 4.02e-01 86.4% 43.8%
4964254 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.75 62.0 3.86e-01 100.0% 16.5%
4452096 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.74 51.0 3.28e-01 72.7% 17.9%
5067843 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 60.0 5.84e-01 100.0% 82.0%
3920796 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.72 62.0 4.90e-01 100.0% 83.2%
4550123 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.71 57.0 5.17e-01 100.0% 65.0%
4060121 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.71 45.0 4.02e-01 100.0% 46.7%
3662896 101.1.1.411 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.71 58.0 4.17e-01 97.7% 32.0%
4876273 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.71 56.0 4.91e-01 100.0% 58.2%
3477670 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.70 47.0 4.21e-01 70.5% 49.2%
4061395 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.66 45.0 3.85e-01 72.7% 44.0%
4125586 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.64 54.0 3.57e-01 97.7% 86.8%
3755357 108.1.1.74 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 0.63 43.0 3.64e-01 75.0% 41.2%
2391944 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.62 52.0 4.25e-01 100.0% 62.5%
4938704 101.1.2.750 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27374 0.59 46.0 3.80e-01 100.0% 97.0%
3717378 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.58 49.0 3.04e-01 100.0% 61.3%
4371976 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.57 44.0 2.49e-01 100.0% 18.1%
4938071 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.33e-01 97.7% 88.9%
3595191 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 40.0 3.55e-01 95.5% 62.5%
4269306 101.1.1.287 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF28388 0.51 41.0 4.02e-01 90.9% 94.0%