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P3
Euk-VirUgandan_cassava_brown_streak_virus
P3__YP_004063976__Ugandan_cassava_brown_streak_virus__946046
Identity
- Accession:
- YP_004063976 ↗
- Protein ID:
- P3
- Kingdom:
- euk
Quality
70.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Ipomovirus›
Ugandan_cassava_brown_streak_virus
TaxID: 946046
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-155
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.60 | 37.0 | 4.54e-01 | 95.4% | 96.8% |
| 7wujE01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 46.0 | 3.83e-01 | 83.4% | 89.7% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.56 | 34.0 | 3.81e-01 | 87.4% | 77.9% |
| 2l6jA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 38.0 | 4.24e-01 | 80.8% | 95.5% |
| 2lsgA00 | 1.20.58.1280 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain | 0.52 | 32.0 | 3.86e-01 | 79.5% | 94.8% |
| 3u64A00 | 1.25.40.920 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component | 0.51 | 39.0 | 3.21e-01 | 88.7% | 43.2% |
| 4mudC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 35.0 | 3.16e-01 | 71.5% | 76.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041258 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.65 | 34.0 | 3.75e-01 | 90.1% | 60.8% |
| 3345315 | 604.5.1.31 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 | 0.56 | 44.0 | 3.63e-01 | 81.5% | 85.6% |
| 3972132 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.54 | 39.0 | 3.97e-01 | 72.8% | 77.2% |
| 3687207 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.52 | 36.0 | 3.94e-01 | 77.5% | 87.5% |
| 3436790 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 3.85e-01 | 81.5% | 78.8% |
D2
medium
residues 190-294