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P3

Euk-Vir

Lupinus_mosaic_virus

P3__YP_004123943__Lupinus_mosaic_virus__573615

Identity

Accession:
YP_004123943 ↗
Protein ID:
P3
Kingdom:
euk

Quality

78.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Lupinus_mosaic_virus

TaxID: 573615

Cluster

View cluster (66 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-192
PDB
Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13608.11 best Potyvirid-P3 94.9 8.40e-27 92.7% 33.6%
D2 medium residues 204-289
PDB
Domain cluster: representative
D3 medium residues 290-359
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 37.0 4.08e-01 85.7% 66.1%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.66 49.0 5.16e-01 84.3% 85.9%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.66 48.0 4.30e-01 84.3% 54.1%
1dxrL02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.65 51.0 4.55e-01 91.4% 58.3%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 4.40e-01 84.3% 66.7%
1jfiB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.64 55.0 4.51e-01 97.1% 52.6%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.81e-01 81.4% 91.8%
3fdiB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 37.0 2.73e-01 70.0% 22.9%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.65e-01 75.7% 97.9%
1n3kA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 46.0 3.79e-01 78.6% 63.1%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.63 47.0 3.76e-01 84.3% 39.6%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.62 43.0 3.55e-01 72.9% 81.3%
1ussA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.30e-01 80.0% 79.5%
2l35A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.62 43.0 4.55e-01 90.0% 82.5%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.61 48.0 4.56e-01 85.7% 71.8%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.61 48.0 3.26e-01 85.7% 23.3%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 43.0 4.15e-01 75.7% 87.7%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.59 50.0 4.40e-01 92.9% 79.2%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.59 43.0 4.34e-01 77.1% 87.1%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.58 46.0 4.25e-01 87.1% 66.7%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.58 44.0 4.05e-01 81.4% 65.2%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 48.0 4.02e-01 97.1% 78.9%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 44.0 3.85e-01 88.6% 59.5%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 3.53e-01 90.0% 56.1%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 41.0 4.11e-01 84.3% 94.4%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.53 37.0 3.73e-01 77.1% 78.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960575 610.4.1.0 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.79 57.0 4.35e-01 75.7% 50.7%
3286383 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.74 54.0 5.33e-01 84.3% 72.0%
5021067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 4.27e-01 77.1% 47.6%
5028077 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.70 56.0 4.77e-01 85.7% 64.5%
3554511 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.70 48.0 4.63e-01 74.3% 62.5%
4940986 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.69 49.0 4.46e-01 81.4% 55.8%
3310491 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 47.0 5.02e-01 77.1% 83.3%
5017110 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.68 47.0 4.53e-01 74.3% 63.7%
5054534 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 50.0 4.37e-01 78.6% 57.1%
3927925 101.6.1.0 ↗ alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C 0.66 53.0 5.35e-01 88.6% 94.3%
3236724 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.80e-01 92.9% 69.5%
5036066 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.65 45.0 3.98e-01 71.4% 50.0%
2984622 3396.1.1.1 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N 0.65 41.0 4.19e-01 72.9% 65.2%
5054741 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.65 50.0 4.26e-01 81.4% 54.5%
4883080 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.63 53.0 4.27e-01 92.9% 48.5%
3535346 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.62 45.0 2.77e-01 85.7% 12.1%
3819777 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 46.0 4.01e-01 85.7% 51.4%
3457996 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 42.0 3.65e-01 72.9% 46.1%
4964878 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 48.0 4.81e-01 90.0% 85.7%
3668610 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 52.0 4.74e-01 98.6% 85.3%
5029119 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 49.0 4.12e-01 92.9% 98.3%
5000777 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 45.0 4.14e-01 85.7% 71.3%
4017640 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 48.0 4.22e-01 94.3% 82.4%