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P3
Euk-VirImpatiens_flower_break_virus
P3__YP_009255234_P3__Impatiens_flower_break_virus__2170135
Identity
- Accession:
- YP_009255234_P3 ↗
- Protein ID:
- P3
- Kingdom:
- euk
Quality
80.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Impatiens_flower_break_virus
TaxID: 2170135
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-164
Domain cluster:
rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13608.11 best | Potyvirid-P3 | 89.3 | 4.40e-25 | 94.4% | 33.4% |
D2
medium
residues 197-291
Domain cluster:
representative
D3
medium
residues 292-347
Domain cluster:
rep: P3_protein__YP_001816828__Telosma_mosaic_virus__400394__D286-347
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ma3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 53.0 | 4.70e-01 | 87.5% | 58.0% |
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.65 | 51.0 | 3.60e-01 | 89.3% | 92.8% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.64 | 50.0 | 4.62e-01 | 87.5% | 84.0% |
| 4hn9A02 | 1.20.58.2180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 44.0 | 4.11e-01 | 73.2% | 97.1% |
| 6muwB00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.62 | 52.0 | 3.54e-01 | 100.0% | 62.0% |
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 43.0 | 2.94e-01 | 75.0% | 99.6% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 51.0 | 4.10e-01 | 98.2% | 71.3% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.61 | 49.0 | 3.89e-01 | 98.2% | 70.1% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.59 | 51.0 | 4.04e-01 | 100.0% | 59.3% |
| 7dd9A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.58 | 44.0 | 2.89e-01 | 85.7% | 28.1% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.58 | 46.0 | 3.91e-01 | 87.5% | 95.9% |
| 6a2aA01 | 1.50.10.130 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain | 0.58 | 43.0 | 3.00e-01 | 82.1% | 100.0% |
| 6f8hC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 45.0 | 3.97e-01 | 92.9% | 79.6% |
| 1ymyB02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 46.0 | 3.11e-01 | 96.4% | 31.7% |
| 3knwB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 45.0 | 3.22e-01 | 91.1% | 35.6% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 38.0 | 4.22e-01 | 82.1% | 97.6% |
| 3ceiA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.55 | 43.0 | 4.20e-01 | 100.0% | 82.5% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 42.0 | 3.08e-01 | 85.7% | 45.5% |
| 4ks9B02 | 3.40.630.150 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Malonyl-CoA decarboxylase, catalytic domain | 0.54 | 44.0 | 2.95e-01 | 100.0% | 75.1% |
| 3v2lA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 39.0 | 3.15e-01 | 80.4% | 37.5% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.53 | 40.0 | 3.62e-01 | 89.3% | 58.4% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 41.0 | 4.00e-01 | 92.9% | 100.0% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 45.0 | 3.47e-01 | 98.2% | 100.0% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 42.0 | 3.78e-01 | 89.3% | 100.0% |
| 1bc0A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.51 | 43.0 | 3.71e-01 | 92.9% | 91.9% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5063967 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 64.0 | 6.25e-01 | 89.3% | 76.7% |
| 5050325 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.79 | 54.0 | 3.37e-01 | 71.4% | 14.0% |
| 3495862 | 101.1.2.383 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_69 | 0.79 | 56.0 | 4.56e-01 | 83.9% | 42.0% |
| 3268630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 63.0 | 5.29e-01 | 89.3% | 54.7% |
| 5067843 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.77 | 59.0 | 6.21e-01 | 87.5% | 92.0% |
| 3244076 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 61.0 | 5.68e-01 | 89.3% | 70.0% |
| 5028356 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.76 | 66.0 | 4.99e-01 | 94.6% | 46.4% |
| 3334378 | 101.35.1.32 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF25874 | 0.76 | 60.0 | 6.12e-01 | 89.3% | 90.9% |
| 4982795 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 61.0 | 5.83e-01 | 89.3% | 78.5% |
| 3472278 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.74 | 60.0 | 5.45e-01 | 91.1% | 66.7% |
| 3490008 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 59.0 | 5.69e-01 | 91.1% | 76.9% |
| 4952882 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 58.0 | 5.28e-01 | 94.6% | 66.3% |
| 4983598 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 55.0 | 5.34e-01 | 92.9% | 78.5% |
| 4996181 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 54.0 | 5.43e-01 | 91.1% | 90.9% |
| 4941656 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 54.0 | 4.90e-01 | 91.1% | 66.3% |
| 5062039 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.68 | 50.0 | 5.23e-01 | 89.3% | 90.0% |
| None | — | 0.67 | 53.0 | 4.84e-01 | 94.6% | 65.0% | |
| 4974387 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.65 | 53.0 | 3.25e-01 | 91.1% | 46.4% |
| 4329038 | 375.1.9.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Insulin | 0.64 | 46.0 | 3.88e-01 | 75.0% | 46.7% |
| 3531209 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.63 | 48.0 | 4.55e-01 | 89.3% | 67.1% |
| 5046448 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.63 | 48.0 | 4.75e-01 | 87.5% | 88.3% |
| 4410495 | 605.1.1.206 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Insulin | 0.62 | 44.0 | 3.72e-01 | 75.0% | 46.7% |
| 3960341 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.61 | 43.0 | 3.38e-01 | 75.0% | 35.0% |
| 3281710 | 323.1.1.20 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N | 0.58 | 43.0 | 2.84e-01 | 83.9% | 18.0% |
| 3468262 | 207.1.1.103 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 | 0.58 | 44.0 | 2.52e-01 | 83.9% | 24.1% |
| 4940618 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.57 | 45.0 | 4.04e-01 | 89.3% | 63.7% |
| 3512559 | 192.1.1.37 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 | 0.56 | 39.0 | 3.76e-01 | 78.6% | 63.1% |
| 3253812 | 601.7.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Ribonuc_2-5A | 0.55 | 46.0 | 3.45e-01 | 96.4% | 51.3% |
| 3715199 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 45.0 | 2.77e-01 | 96.4% | 66.5% |
| 3950977 | 5058.1.1.9 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V | 0.54 | 44.0 | 3.39e-01 | 100.0% | 73.5% |
| 3380343 | 109.4.1.240 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_long | 0.53 | 37.0 | 2.79e-01 | 75.0% | 26.9% |
| 3731412 | 323.1.1.20 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N | 0.53 | 43.0 | 2.79e-01 | 89.3% | 55.8% |