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P3
Euk-VirCucurbit_vein_banding_virus
P3__YP_009389252__Cucurbit_vein_banding_virus__2005044
Identity
- Accession:
- YP_009389252 ↗
- Protein ID:
- P3
- Kingdom:
- euk
Quality
75.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Cucurbit_vein_banding_virus
TaxID: 2005044
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-179
Domain cluster:
rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13608.11 best | Potyvirid-P3 | 78.2 | 1.00e-21 | 89.1% | 33.9% |
D2
high
residues 264-355
Domain cluster:
rep: third_protein__YP_008320584__Habenaria_mosaic_virus__1324128__D254-348
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.61 | 43.0 | 3.64e-01 | 73.9% | 87.5% |
| 1sedA00 | 1.10.3750.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein YhaI fold › YhaI-like | 0.57 | 43.0 | 4.04e-01 | 80.4% | 83.0% |
| 2b1eA02 | 1.20.1310.30 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › | 0.57 | 41.0 | 3.44e-01 | 73.9% | 56.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3615624 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.75 | 51.0 | 4.92e-01 | 70.7% | 77.1% |
| None | — | 0.69 | 47.0 | 4.69e-01 | 70.7% | 73.7% | |
| 3588722 | 223.1.1.81 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK | 0.68 | 61.0 | 4.81e-01 | 100.0% | 59.5% |
| 3617130 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.67 | 51.0 | 5.12e-01 | 81.5% | 84.2% |
| 4623986 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 53.0 | 3.83e-01 | 96.7% | 45.6% |
| 3829752 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.59 | 44.0 | 3.07e-01 | 78.3% | 40.7% |