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P3
Euk-VirHyacinth_mosaic_virus
P3__YP_009466007__Hyacinth_mosaic_virus__421013
Identity
- Accession:
- YP_009466007 ↗
- Protein ID:
- P3
- Kingdom:
- euk
Quality
77.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Hyacinth_mosaic_virus
TaxID: 421013
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-186
Domain cluster:
rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13608.11 best | Potyvirid-P3 | 93.0 | 3.10e-26 | 91.4% | 36.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.64 | 25.0 | 3.18e-01 | 91.9% | 57.3% |
| 2i6hA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 31.0 | 4.08e-01 | 76.9% | 87.5% |
| 3iu6A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 32.0 | 3.56e-01 | 74.2% | 66.4% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 28.0 | 3.56e-01 | 88.2% | 79.5% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 26.0 | 3.33e-01 | 83.9% | 76.2% |
| 3nf2A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 42.0 | 3.51e-01 | 81.2% | 69.2% |
| 2j1oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 40.0 | 3.67e-01 | 76.9% | 85.1% |
| 2hr2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 37.0 | 3.99e-01 | 71.0% | 87.8% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 34.0 | 4.03e-01 | 92.5% | 97.6% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 25.0 | 3.18e-01 | 86.0% | 75.5% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.52 | 39.0 | 4.17e-01 | 79.6% | 93.3% |
| 3r6nB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 28.0 | 2.64e-01 | 94.1% | 40.2% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.51 | 28.0 | 3.31e-01 | 91.4% | 76.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4985462 | 192.2.1.89 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF7121 | 0.74 | 32.0 | 2.95e-01 | 92.5% | 31.7% |
| 3802212 | 109.4.1.541 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4220 | 0.67 | 49.0 | 4.37e-01 | 75.3% | 84.8% |
| 4020850 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.59 | 43.0 | 3.71e-01 | 74.7% | 91.8% |
| 3864123 | 633.21.1.10 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL | 0.55 | 34.0 | 4.07e-01 | 74.2% | 89.2% |
| 3250692 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 31.0 | 3.33e-01 | 97.8% | 65.0% |
| 3807513 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.53 | 38.0 | 4.31e-01 | 81.2% | 100.0% |
| 3585022 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.53 | 32.0 | 2.88e-01 | 97.8% | 42.3% |
| 4995421 | 3281.1.2.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh | 0.52 | 40.0 | 3.49e-01 | 79.6% | 81.7% |
| 3274860 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.51 | 35.0 | 3.54e-01 | 100.0% | 68.6% |
| 3228861 | 5001.1.1.27 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre | 0.51 | 39.0 | 3.28e-01 | 78.5% | 75.3% |
| 3257030 | 109.4.1.1264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16 | 0.51 | 41.0 | 2.94e-01 | 91.9% | 29.4% |
| 4162366 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 39.0 | 3.05e-01 | 80.6% | 82.1% |
D2
medium
residues 251-348
Domain cluster:
rep: third_protein__YP_008320584__Habenaria_mosaic_virus__1324128__D254-348
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rd0B00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 62.0 | 5.46e-01 | 96.9% | 62.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719307 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.79 | 64.0 | 5.00e-01 | 85.7% | 47.0% |
| 3612306 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 53.0 | 4.57e-01 | 75.5% | 51.4% |
| 3923553 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.70 | 59.0 | 4.85e-01 | 93.9% | 50.9% |
| 5020872 | 1079.1.1.1 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD | 0.68 | 36.0 | 2.77e-01 | 88.8% | 24.4% |
| 3678358 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.61 | 39.0 | 2.67e-01 | 82.7% | 17.7% |
| 3360875 | 7015.1.1.4 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › PLAC8 | 0.52 | 37.0 | 3.50e-01 | 71.4% | 76.5% |
| 3821523 | 5069.1.3.122 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PLAC8 | 0.51 | 36.0 | 3.41e-01 | 71.4% | 75.7% |