P3

Euk-Vir

Daphne_virus_Y

P3__YP_009509100__Daphne_virus_Y__282712

Identity

75.9 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Daphne_virus_Y

TaxID: 282712

View cluster (4 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-191

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13608.11 best	Potyvirid-P3	82.1	6.50e-23	93.7%	34.3%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4l8iB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.56	29.0	3.61e-01	86.8%	82.1%
2hs5A02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.55	32.0	3.70e-01	86.8%	76.4%
1e3gA00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.55	39.0	3.54e-01	71.4%	94.8%
2xseA00	1.20.120.1440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain	0.54	31.0	3.41e-01	98.4%	66.0%
3m71A00	1.50.10.150	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Voltage-dependent anion channel	0.53	38.0	3.28e-01	73.0%	85.1%
4dloB02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	30.0	3.76e-01	97.9%	90.6%
6gpxB00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	40.0	3.64e-01	80.4%	91.3%
4nq0A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	36.0	3.27e-01	70.4%	92.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4932048	3543.1.1.0 ↗	alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel	0.58	41.0	4.23e-01	71.4%	84.4%
3585022	109.4.1.32 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G	0.56	33.0	2.97e-01	96.8%	41.1%
4020850	3758.1.1.0 ↗	alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins	0.56	40.0	3.48e-01	72.5%	90.8%
4019650	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	41.0	3.60e-01	81.5%	85.7%
3733826	5001.1.1.131 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › DUF7702	0.52	40.0	3.72e-01	78.8%	89.2%
3274765	109.4.1.2042 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_8, TPR_12, TPR_16	0.51	38.0	3.44e-01	76.2%	74.9%
4162366	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	38.0	2.98e-01	77.8%	81.4%
3598148	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.50	34.0	3.57e-01	98.9%	75.2%

D2 medium residues 192-255

PDB

D3 medium residues 256-342

PDB

Domain cluster: rep: third_protein__YP_008320584__Habenaria_mosaic_virus__1324128__D254-348