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P3

Euk-Vir

Blackberry_virus_Y

P3__YP_851201__Blackberry_virus_Y__323118

Identity

Accession:: YP_851201 ↗
Protein ID:: P3
Kingdom:: euk

Quality

67.5 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Brambyvirus› Blackberry_virus_Y

TaxID: 323118

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-172

PDB

Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13608.11 best	Potyvirid-P3	225.8	1.70e-66	94.2%	36.1%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2m6bA00	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.65	33.0	3.59e-01	100.0%	54.7%
2i6hA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.64	34.0	4.30e-01	76.7%	88.5%
6ircA01	1.20.1230.10	Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain	0.63	28.0	2.68e-01	92.4%	35.0%
6l1xA01	1.20.210.10	Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain	0.57	46.0	3.33e-01	86.0%	63.2%
4wnfA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	43.0	3.81e-01	78.5%	72.5%
2ijqA00	1.10.3450.10	Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like	0.54	39.0	4.16e-01	84.3%	86.9%
4abnA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	40.0	3.49e-01	80.2%	70.6%
4i1aA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	43.0	3.72e-01	89.0%	92.7%
3llkA02	1.20.120.310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain	0.52	40.0	4.34e-01	90.7%	98.6%
7q37A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	42.0	3.92e-01	87.8%	86.4%
2jqqA00	1.20.58.1240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	35.0	3.69e-01	87.2%	78.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4373346	4177.1.1.5 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5	0.63	28.0	2.57e-01	96.5%	32.1%
3611803	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.60	45.0	3.97e-01	76.7%	94.8%
3609864	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.57	45.0	4.22e-01	85.5%	68.2%
3257840	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.55	37.0	3.77e-01	100.0%	70.3%
3293665	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.52	42.0	3.60e-01	86.0%	77.1%
3822661	7064.1.1.0 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1	0.52	39.0	3.83e-01	78.5%	95.7%

D2 medium residues 209-348

PDB