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P3_protein
Euk-VirLettuce_mosaic_virus
P3_protein__NP_734155__Lettuce_mosaic_virus__12202
Identity
- Accession:
- NP_734155 ↗
- Protein ID:
- P3_protein
- Kingdom:
- euk
Quality
76.0
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Lettuce_mosaic_virus
TaxID: 12202
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-211
Domain cluster:
rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13608.11 best | Potyvirid-P3 | 99.1 | 4.60e-28 | 93.3% | 33.6% |
D2
medium
residues 281-368
Domain cluster:
rep: third_protein__YP_008320584__Habenaria_mosaic_virus__1324128__D254-348
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 50.0 | 4.51e-01 | 77.3% | 67.5% |
| 1rypL00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 42.0 | 3.14e-01 | 71.6% | 43.4% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.59 | 42.0 | 3.66e-01 | 73.9% | 59.5% |
| 4hkaA01 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 44.0 | 3.04e-01 | 86.4% | 31.6% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.55 | 38.0 | 2.95e-01 | 71.6% | 56.5% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 34.0 | 3.04e-01 | 70.5% | 46.0% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 36.0 | 2.73e-01 | 70.5% | 42.4% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 36.0 | 2.72e-01 | 70.5% | 41.2% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 36.0 | 2.71e-01 | 70.5% | 40.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788874 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.79 | 46.0 | 4.27e-01 | 73.9% | 47.3% |
| 3499391 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.74 | 58.0 | 4.06e-01 | 83.0% | 38.1% |
| 3345589 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.65 | 56.0 | 4.36e-01 | 94.3% | 49.5% |
| 5070203 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.62 | 57.0 | 3.68e-01 | 100.0% | 71.3% |
| 5039745 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.59 | 41.0 | 3.05e-01 | 80.7% | 27.6% |
| 4971669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 3.59e-01 | 78.4% | 75.9% |
| 3662110 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.53 | 36.0 | 2.70e-01 | 70.5% | 39.5% |
| 3599053 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.53 | 36.0 | 2.69e-01 | 70.5% | 38.1% |
| 3400905 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.52 | 36.0 | 2.67e-01 | 70.5% | 39.1% |
| 4012754 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.52 | 45.0 | 3.33e-01 | 98.9% | 62.4% |
| 3934966 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.50 | 35.0 | 2.59e-01 | 72.7% | 35.2% |