P3_protein

Euk-Vir

Narcissus_degeneration_virus

P3_protein__YP_001019190__Narcissus_degeneration_virus__394036

Identity

73.5 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Narcissus_degeneration_virus

TaxID: 394036

View cluster (66 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-205

PDB

Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13608.11 best	Potyvirid-P3	60.2	2.80e-16	86.6%	33.6%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hz8A00	1.20.120.660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain	0.59	36.0	4.42e-01	73.2%	94.8%
1yo7A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.56	35.0	4.19e-01	73.2%	91.7%
3lmfA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.55	34.0	4.08e-01	76.0%	98.2%
3nf2A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	44.0	3.60e-01	86.0%	69.2%
2ijqA00	1.10.3450.10	Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like	0.53	39.0	4.26e-01	88.3%	94.5%
4abnA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	39.0	3.37e-01	77.1%	69.2%
3t6gB00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.52	35.0	4.02e-01	74.3%	92.5%
2jqqA00	1.20.58.1240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	38.0	4.10e-01	92.7%	90.3%
2j1oA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	41.0	3.70e-01	84.9%	98.4%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4932048	3543.1.1.0 ↗	alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel	0.58	45.0	4.54e-01	80.4%	90.6%
3610147	3755.1.1.0 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related	0.55	27.0	2.83e-01	80.4%	49.4%
4995421	3281.1.2.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh	0.52	43.0	3.63e-01	87.7%	84.1%
4565027	109.4.1.1491 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_11, TPR_16	0.51	44.0	3.53e-01	93.3%	75.8%
3290478	1075.4.1.9 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane	0.51	41.0	2.66e-01	86.0%	94.9%

D2 high residues 298-383

PDB

Domain cluster: rep: third_protein__YP_008320584__Habenaria_mosaic_virus__1324128__D254-348

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fdiB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.75	31.0	2.38e-01	73.3%	19.0%
3v9rA00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.73	48.0	4.77e-01	72.1%	65.9%
3a8pA02	6.10.140.680	Special › Helix non-globular › Helix Hairpins ›	0.65	50.0	4.51e-01	81.4%	62.3%
6qm7J00	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.64	46.0	3.47e-01	74.4%	78.9%
6muwK00	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.62	45.0	3.46e-01	75.6%	82.6%
6e5bN00	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.60	44.0	3.34e-01	75.6%	79.4%
6vddA02	1.20.1060.10	Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4	0.57	40.0	3.64e-01	73.3%	81.7%
2hsbA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.53	36.0	3.16e-01	70.9%	65.9%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5063967	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.78	48.0	5.64e-01	70.9%	88.3%
5053119	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.74	51.0	4.57e-01	73.3%	51.7%
4962879	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.67	49.0	3.98e-01	75.6%	42.9%
None	—		0.67	43.0	3.54e-01	70.9%	36.7%
3481731	148.1.1.18 ↗	alpha arrays › Histone-like › Histone-related › Histone › CENP-S	0.65	45.0	4.41e-01	73.3%	65.3%
5070203	109.4.1.202 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16	0.65	59.0	3.77e-01	97.7%	64.5%
4978695	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.63	53.0	4.10e-01	91.9%	70.8%
4269761	142.1.1.1 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2	0.62	43.0	3.35e-01	70.9%	51.6%
4452096	142.1.1.1 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2	0.62	44.0	3.35e-01	75.6%	32.3%
3717378	2005.1.1.18 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase	0.53	38.0	2.58e-01	74.4%	22.5%