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P3_protein

Euk-Vir

Telosma_mosaic_virus

P3_protein__YP_001816828__Telosma_mosaic_virus__400394

Identity

Accession:
YP_001816828 ↗
Protein ID:
P3_protein
Kingdom:
euk

Quality

81.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Telosma_mosaic_virus

TaxID: 400394

Cluster

View cluster (66 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-194
PDB
Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13608.11 best Potyvirid-P3 94.9 8.50e-27 92.7% 34.7%
D2 medium residues 286-347
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.80 59.0 4.02e-01 82.3% 24.7%
1ku2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 56.0 5.84e-01 85.5% 86.0%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.75 51.0 4.53e-01 71.0% 56.2%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 54.0 5.88e-01 93.5% 100.0%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 49.0 4.00e-01 87.1% 40.0%
2eucA00 1.10.8.570 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB 0.72 56.0 4.70e-01 85.5% 51.4%
1bdp002 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.71 55.0 4.51e-01 82.3% 78.9%
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.71 55.0 4.41e-01 82.3% 80.9%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 5.38e-01 85.5% 87.7%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.70 53.0 4.26e-01 82.3% 52.5%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.69 50.0 3.83e-01 75.8% 58.6%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.68 50.0 3.26e-01 77.4% 19.8%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.64e-01 82.3% 58.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 49.0 3.15e-01 75.8% 23.3%
6muwM00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 60.0 4.12e-01 100.0% 82.2%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 47.0 5.09e-01 82.3% 86.8%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.67 48.0 4.61e-01 82.3% 65.3%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.67 50.0 4.48e-01 79.0% 61.2%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.66 58.0 4.12e-01 100.0% 86.7%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.65 56.0 3.81e-01 96.8% 66.4%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 45.0 4.30e-01 83.9% 62.5%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.64 53.0 4.22e-01 96.8% 74.3%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.64 50.0 3.69e-01 82.3% 38.6%
2oexA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.63 46.0 3.22e-01 77.4% 35.0%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 48.0 4.72e-01 82.3% 76.5%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 45.0 4.54e-01 82.3% 73.4%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.63 46.0 4.61e-01 79.0% 95.2%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 45.0 4.58e-01 77.4% 80.6%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 45.0 4.47e-01 79.0% 74.6%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 49.0 4.85e-01 88.7% 81.2%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 48.0 4.38e-01 82.3% 63.7%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 44.0 4.54e-01 79.0% 79.3%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 45.0 4.98e-01 77.4% 95.9%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 48.0 4.34e-01 82.3% 66.7%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 50.0 4.13e-01 90.3% 56.0%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.61 47.0 4.13e-01 82.3% 60.0%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 49.0 3.09e-01 87.1% 22.8%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.74e-01 88.7% 85.0%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.60 51.0 4.49e-01 93.5% 66.3%
5gj7A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.59 48.0 3.87e-01 91.9% 52.0%
3v2lA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.59 43.0 3.51e-01 79.0% 100.0%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 48.0 4.44e-01 87.1% 71.4%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 44.0 4.44e-01 80.6% 82.5%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.58 44.0 4.61e-01 88.7% 87.9%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 47.0 4.54e-01 88.7% 97.1%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.57 49.0 4.38e-01 93.5% 97.6%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 49.0 4.17e-01 100.0% 92.4%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.55 44.0 4.06e-01 87.1% 70.0%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.55 40.0 3.88e-01 82.3% 80.0%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.19e-01 90.3% 82.6%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.50 44.0 3.69e-01 100.0% 70.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067843 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.83 59.0 6.47e-01 77.4% 92.0%
3668668 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.82 62.0 4.84e-01 85.5% 40.0%
None — 0.82 63.0 4.57e-01 85.5% 33.3%
3256155 192.20.1.6 ↗ alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26116 0.82 58.0 4.95e-01 82.3% 48.4%
5063967 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 6.45e-01 90.3% 85.0%
3299379 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.81 62.0 4.54e-01 85.5% 33.3%
3662896 101.1.1.411 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.81 62.0 4.79e-01 85.5% 40.0%
5050325 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.81 57.0 3.62e-01 75.8% 16.1%
4555675 101.1.1.27 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DsrC 0.80 62.0 5.06e-01 82.3% 48.6%
2807554 101.1.1.27 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DsrC 0.79 61.0 5.10e-01 82.3% 51.5%
4945073 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.78 63.0 5.54e-01 88.7% 68.9%
3606823 3476.1.1.0 ↗ alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.77 57.0 5.78e-01 83.9% 80.0%
4962879 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.77 65.0 4.75e-01 93.5% 76.7%
972045 148.1.1.18 ↗ alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.76 53.0 4.82e-01 74.2% 56.2%
4946450 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.76 58.0 5.22e-01 83.9% 67.0%
4977227 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 57.0 4.87e-01 82.3% 53.1%
3690556 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.74 51.0 5.17e-01 72.6% 73.3%
4940618 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.74 58.0 5.37e-01 85.5% 71.2%
3943035 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.74 60.0 5.94e-01 91.9% 98.5%
4988114 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.74 49.0 3.27e-01 79.0% 18.3%
4952882 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 5.66e-01 95.2% 80.0%
5054485 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.72 53.0 4.81e-01 77.4% 96.2%
3183783 148.1.1.18 ↗ alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.72 53.0 4.36e-01 80.6% 44.5%
4550123 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.71 56.0 5.75e-01 91.9% 88.3%
3971933 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 5.30e-01 85.5% 76.9%
4983598 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.27e-01 82.3% 78.5%
5044635 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.70 63.0 4.51e-01 100.0% 91.4%
4339699 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.70 56.0 5.91e-01 95.2% 98.2%
4932707 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 53.0 4.21e-01 82.3% 40.8%
5062039 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.70 45.0 4.91e-01 74.2% 82.0%
4148139 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 56.0 4.14e-01 91.9% 34.8%
3259657 605.8.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like 0.68 52.0 4.98e-01 80.6% 80.0%
3602986 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.67 47.0 4.08e-01 74.2% 49.5%
3715199 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 59.0 3.61e-01 100.0% 76.1%
3829115 101.1.1.270 ↗ alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.66 50.0 4.97e-01 85.5% 78.5%
3644937 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.65 56.0 4.15e-01 95.2% 44.4%
3705510 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.64 57.0 3.97e-01 100.0% 47.3%
3164721 1078.1.1.0 ↗ extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit 0.64 47.0 4.12e-01 77.4% 55.6%
1316757 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.64 48.0 3.04e-01 83.9% 16.3%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.64 55.0 4.08e-01 96.8% 44.4%
4056602 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.63 55.0 3.97e-01 96.8% 97.7%
3505608 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.63 48.0 4.46e-01 79.0% 66.7%
3938318 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.63 53.0 4.18e-01 90.3% 82.5%
3978620 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.63 54.0 3.99e-01 96.8% 43.6%
3948820 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.63 54.0 4.80e-01 96.8% 80.0%
5046448 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.61 45.0 4.54e-01 80.6% 85.0%
4058877 101.1.2.27 ↗ alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.61 48.0 4.69e-01 87.1% 82.9%
3373039 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.61 47.0 3.83e-01 82.3% 73.0%
3599791 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 47.0 2.88e-01 82.3% 15.0%
4613072 101.1.2.721 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27113 0.59 47.0 3.48e-01 90.3% 32.7%
4084484 6155.1.1.17 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › LAB_N 0.59 49.0 4.64e-01 91.9% 93.3%
3582922 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 40.0 3.70e-01 71.0% 55.0%
5029847 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 45.0 4.20e-01 85.5% 70.7%
3950977 5058.1.1.9 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V 0.56 46.0 3.55e-01 96.8% 78.1%
3934155 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 44.0 3.74e-01 90.3% 69.0%
3281710 323.1.1.20 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N 0.52 44.0 3.01e-01 98.4% 64.0%