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P3_protein
Euk-VirTamarillo_leaf_malformation_virus
P3_protein__YP_009126863__Tamarillo_leaf_malformation_virus__945960
Identity
- Accession:
- YP_009126863 ↗
- Protein ID:
- P3_protein
- Kingdom:
- euk
Quality
76.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Tamarillo_leaf_malformation_virus
TaxID: 945960
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-197
Domain cluster:
rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13608.11 best | Potyvirid-P3 | 92.6 | 4.20e-26 | 92.8% | 35.6% |
D2
high
residues 252-340
Domain cluster:
rep: third_protein__YP_008320584__Habenaria_mosaic_virus__1324128__D254-348
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.54 | 38.0 | 2.92e-01 | 71.9% | 56.0% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 36.0 | 2.81e-01 | 70.8% | 47.7% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 36.0 | 2.75e-01 | 70.8% | 79.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3802520 | 101.1.1.476 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › POX | 0.79 | 48.0 | 4.60e-01 | 74.2% | 54.0% |
| 3439564 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.77 | 57.0 | 4.40e-01 | 77.5% | 47.0% |
| 3715199 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.71 | 55.0 | 3.55e-01 | 80.9% | 76.1% |
| 4219668 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.71 | 58.0 | 4.17e-01 | 93.3% | 31.0% |
| 5039745 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.67 | 45.0 | 3.33e-01 | 79.8% | 27.1% |
| 3807993 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.63 | 47.0 | 3.36e-01 | 79.8% | 43.6% |
| 5070203 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.61 | 56.0 | 3.62e-01 | 98.9% | 66.8% |
| 3838241 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 44.0 | 3.40e-01 | 85.4% | 60.5% |
| 4858758 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.52 | 37.0 | 2.87e-01 | 73.0% | 47.1% |