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P3_protein

Euk-Vir

Saffron_latent_virus

P3_protein__YP_009458611__Saffron_latent_virus__2070152

Identity

Accession:
YP_009458611 ↗
Protein ID:
P3_protein
Kingdom:
euk

Quality

83.5 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Saffron_latent_virus

TaxID: 2070152

Cluster

View cluster (66 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-165
PDB
Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13608.11 best Potyvirid-P3 81.4 1.00e-22 93.3% 33.4%
D2 high residues 295-345
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.66 55.0 4.52e-01 96.1% 80.6%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.43e-01 94.1% 56.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 40.0 3.42e-01 84.3% 38.8%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.61 45.0 4.36e-01 92.2% 69.8%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 3.40e-01 94.1% 29.5%
2oyoA01 1.20.5.810 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › AhpD-like 0.60 37.0 3.72e-01 84.3% 57.7%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.57 44.0 3.00e-01 84.3% 99.5%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 42.0 3.89e-01 100.0% 64.8%
3fhnA02 1.20.58.1420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain B 0.55 42.0 3.25e-01 84.3% 77.8%
1j0aA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 2.98e-01 100.0% 54.5%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.53 42.0 3.94e-01 100.0% 80.3%
3lyeA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.51 44.0 2.80e-01 100.0% 40.0%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.50 42.0 2.89e-01 100.0% 25.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067843 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.76 60.0 6.14e-01 94.1% 90.0%
3938065 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 5.51e-01 92.2% 66.7%
3936891 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.05e-01 92.2% 56.8%
3472278 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.72 58.0 5.22e-01 94.1% 64.0%
3490008 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.43e-01 94.1% 73.8%
3285244 5063.1.1.19 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › DUF2277 0.69 47.0 4.90e-01 70.6% 91.1%
3741601 148.1.1.18 ↗ alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.68 51.0 4.08e-01 82.4% 50.5%
4230066 101.1.2.27 ↗ alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.68 55.0 4.58e-01 94.1% 51.1%
4059092 101.1.2.27 ↗ alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.68 54.0 4.72e-01 94.1% 57.5%
1482328 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.43e-01 94.1% 56.8%
3925064 148.1.1.7 ↗ alpha arrays › Histone-like › Histone-related › Histone › TAF 0.64 44.0 3.97e-01 80.4% 50.7%
4042207 148.1.1.18 ↗ alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.63 46.0 3.42e-01 80.4% 30.8%
4016091 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 44.0 3.73e-01 76.5% 44.7%
331637 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.63 42.0 2.60e-01 70.6% 11.4%
4975607 109.4.1.124 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_alkylation 0.62 43.0 2.63e-01 74.5% 27.5%
3183783 148.1.1.18 ↗ alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.61 52.0 4.09e-01 96.1% 70.9%
3287143 191.1.1.49 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 0.61 42.0 3.27e-01 74.5% 32.2%
3188397 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 44.0 3.41e-01 80.4% 41.7%
3391864 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 42.0 2.92e-01 76.5% 34.3%
3579615 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.57 39.0 3.36e-01 70.6% 42.4%
3471420 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.57 42.0 3.33e-01 78.4% 79.0%
D3 medium residues 166-278
PDB
Domain cluster: rep: P3__YP_009255234_P3__Impatiens_flower_break_virus__2170135__D197-291