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P45

Euk-Vir

Neodiprion_sertifer_nucleopolyhedrovirus

P45__YP_025140__Neodiprion_sertifer_nucleopolyhedrovirus__111874

Identity

Accession:: YP_025140 ↗
Protein ID:: P45
Kingdom:: euk

Quality

76.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Gammabaculovirus› Neodiprion_sertifer_nucleopolyhedrovirus

TaxID: 111874

Cluster

View cluster (46 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-224

PDB

Domain cluster: rep: hypothetical_protein__YP_667882__Neodiprion_abietis_NPV__204507__D58-231

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04878.20 best	Baculo_p48	127.3	1.10e-36	100.0%	48.4%

D2 medium residues 237-338

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04878.20 best	Baculo_p48	69.0	5.60e-19	100.0%	26.8%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3rrwB01	1.10.520.10	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 ›	0.62	54.0	4.49e-01	96.1%	89.6%
4pt1B00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.59	45.0	4.20e-01	82.4%	96.1%
3s0aA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.58	41.0	3.96e-01	73.5%	95.8%
3v2lA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.54	39.0	3.70e-01	74.5%	100.0%
2gfhA02	1.20.120.710	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain	0.53	35.0	3.77e-01	86.3%	79.1%
4cfsA02	1.10.210.20	Mainly Alpha › Orthogonal Bundle › Uteroglobin ›	0.53	34.0	3.85e-01	84.3%	92.9%
2wgmA01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.53	28.0	3.02e-01	77.5%	58.5%
2eh3A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	40.0	3.76e-01	85.3%	66.4%
2kjgA00	1.20.120.970	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.52	41.0	4.24e-01	86.3%	96.0%
3p5pA03	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.52	41.0	3.07e-01	89.2%	40.7%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	39.0	3.64e-01	82.4%	91.0%
2of7A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	41.0	3.77e-01	88.2%	70.0%
2i2oA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	39.0	3.09e-01	99.0%	38.4%
3h36A00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.51	36.0	3.99e-01	86.3%	97.4%
2zcxA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	40.0	3.24e-01	85.3%	49.8%
6gyhA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	36.0	2.88e-01	76.5%	76.9%
1t33A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	40.0	3.53e-01	87.3%	57.0%
2ondA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	35.0	2.53e-01	90.2%	23.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3216068	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.65	38.0	4.30e-01	82.4%	76.9%
3947893	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.57	43.0	4.00e-01	95.1%	63.1%
3602354	1030.1.1.1 ↗	alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A	0.55	42.0	4.05e-01	83.3%	85.8%
3688928	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.51	36.0	3.35e-01	74.5%	81.4%
3280795	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.51	40.0	3.59e-01	85.3%	60.0%
3370265	604.3.1.1 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG	0.51	33.0	3.14e-01	100.0%	51.5%
4986123	3883.1.1.1 ↗	alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf	0.51	44.0	3.58e-01	100.0%	87.6%
3734532	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.50	38.0	3.34e-01	100.0%	52.5%

D3 medium residues 342-391

PDB

Domain cluster: rep: hypothetical_protein__YP_667882__Neodiprion_abietis_NPV__204507__D350-398

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04878.20 best	Baculo_p48	31.2	1.80e-07	100.0%	13.4%