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P48

Euk-Vir

Lonomia_obliqua_multiple_nucleopolyhedrovirus

P48__YP_009666406__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394

Identity

Accession:
YP_009666406 ↗
Protein ID:
P48
Kingdom:
euk

Quality

84.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lonomia_obliqua_multiple_nucleopolyhedrovirus

TaxID: 134394

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-213
PDB
Domain cluster: rep: hypothetical_protein__YP_667882__Neodiprion_abietis_NPV__204507__D58-231
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04878.20 best Baculo_p48 286.6 4.10e-85 97.6% 55.2%
D2 medium residues 218-310
PDB
Domain cluster: rep: P45__YP_003517840__Lymantria_xylina_nucleopolyhedrovirus__166921__D212-357
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04878.20 best Baculo_p48 91.3 9.70e-26 100.0% 22.7%
D3 medium residues 311-390
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04878.20 best Baculo_p48 84.4 1.20e-23 93.8% 20.0%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zxjA01 1.10.3120.10 Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain 0.73 52.0 3.94e-01 75.0% 80.0%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 54.0 4.16e-01 87.5% 39.7%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 54.0 5.29e-01 88.7% 82.6%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 52.0 5.13e-01 87.5% 84.3%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.63 47.0 3.80e-01 80.0% 77.0%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 49.0 4.85e-01 91.3% 79.5%
2jp7A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 36.0 4.17e-01 82.5% 80.7%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 39.0 4.24e-01 93.8% 76.1%
1hk3A03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 54.0 5.13e-01 93.8% 95.7%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 52.0 4.10e-01 96.2% 43.8%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.61 44.0 4.67e-01 87.5% 85.9%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 41.0 4.48e-01 70.0% 83.6%
6fakA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 51.0 4.87e-01 93.8% 92.6%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 51.0 4.72e-01 93.8% 86.4%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.60 42.0 3.81e-01 73.8% 56.5%
6cxtB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 40.0 3.60e-01 71.2% 50.9%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.58 47.0 4.34e-01 90.0% 73.8%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 46.0 3.93e-01 86.3% 60.8%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.57 47.0 4.47e-01 91.3% 88.7%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.57 39.0 3.81e-01 72.5% 65.1%
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.56 41.0 3.85e-01 78.8% 97.0%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 40.0 3.80e-01 80.0% 66.0%
2oyoA01 1.20.5.810 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › AhpD-like 0.52 31.0 3.70e-01 72.5% 90.4%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.38e-01 85.0% 73.6%
3rvyA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 38.0 3.51e-01 83.7% 85.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3457831 3711.1.1.4 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.66 51.0 3.73e-01 82.5% 51.9%
3400571 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.65 46.0 3.74e-01 75.0% 100.0%
4063794 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.64 50.0 4.54e-01 85.0% 72.7%
3607806 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 47.0 4.30e-01 77.5% 90.5%
4160987 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.63 48.0 4.35e-01 82.5% 73.6%
4489302 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.62 49.0 5.08e-01 91.3% 90.7%
4040148 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.62 48.0 4.48e-01 83.7% 80.0%
3338015 3443.1.1.0 ↗ alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain 0.62 49.0 4.60e-01 87.5% 76.0%
3969537 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.61 47.0 4.40e-01 83.7% 80.0%
4566333 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.59 48.0 4.48e-01 88.7% 84.0%
4069480 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.59 48.0 4.35e-01 88.7% 80.9%
3299259 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.59 49.0 4.24e-01 91.3% 88.8%
4377812 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.59 47.0 4.42e-01 87.5% 84.0%
4362692 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.59 47.0 4.41e-01 87.5% 85.0%
3311490 622.1.1.1 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.58 38.0 3.80e-01 92.5% 63.5%
4992938 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.56 44.0 4.23e-01 85.0% 74.4%
4929191 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.56 41.0 4.21e-01 81.2% 80.0%
3937142 601.54.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 0.56 48.0 3.77e-01 95.0% 54.1%
5052725 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.56 37.0 3.91e-01 76.2% 77.1%
3266845 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.54 41.0 3.47e-01 83.7% 53.8%
3934178 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.53 44.0 3.38e-01 97.5% 63.1%
3815117 1065.1.1.0 ↗ alpha bundles › SPX domain › SPX domain › SPX domain 0.50 38.0 3.48e-01 82.5% 80.9%