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P49

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

P49__YP_009505860__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:: YP_009505860 ↗
Protein ID:: P49
Kingdom:: euk

Quality

62.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-43_65-95_196-227_401-446

PDB

D2 medium residues 44-64_96-195

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1i3pA00	2.60.250.10	Mainly Beta › Sandwich › Baculovirus p35 › Baculovirus p35	0.79	76.0	5.60e-01	100.0%	47.8%
1nvpD02	2.30.18.10	Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain	0.61	22.0	3.34e-01	72.7%	80.4%
1nh2D02	2.30.18.10	Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain	0.59	22.0	3.32e-01	73.6%	81.2%
4eeeA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.59	40.0	4.14e-01	100.0%	73.0%
1c16A02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.59	36.0	3.90e-01	100.0%	74.2%
7zqiA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.59	36.0	4.10e-01	100.0%	84.9%
1dfaA03	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.58	33.0	3.63e-01	90.1%	68.4%
2p8tA02	3.30.1360.30	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain	0.58	43.0	4.53e-01	95.9%	87.2%
2gysA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	34.0	3.99e-01	95.0%	83.7%
1j4wA01	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.56	35.0	4.24e-01	98.3%	100.0%
3bb5A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	37.0	4.03e-01	100.0%	88.3%
1d4dA03	3.90.700.10	Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	0.52	39.0	3.67e-01	90.9%	66.0%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1949	4081.1.1.1 ↗	beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › P35	0.68	64.0	4.66e-01	100.0%	47.2%
3925984	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.65	45.0	4.59e-01	98.3%	73.1%
2420855	1.1.7.42 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PcRGLX_1st	0.58	33.0	3.62e-01	96.7%	68.4%
3791337	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	36.0	3.79e-01	100.0%	70.0%
5029541	242.1.1.0 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases	0.56	29.0	3.33e-01	89.3%	65.6%
5081048	2003.1.5.66 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11	0.51	39.0	3.25e-01	81.0%	93.0%
3740762	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.51	35.0	3.68e-01	95.9%	80.0%
4934117	242.1.1.0 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases	0.51	30.0	3.39e-01	91.7%	80.0%

D3 medium residues 231-339

PDB