P49

Euk-Vir

Spodoptera_exempta_nucleopolyhedrovirus

P49__YP_010086555__Spodoptera_exempta_nucleopolyhedrovirus__1242863

Identity

80.0 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_exempta_nucleopolyhedrovirus

TaxID: 1242863

View cluster (46 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-222

PDB

Domain cluster: rep: hypothetical_protein_NeseNPV_gp63__YP_025170__Neodiprion_sertifer_nucleopolyhedrovirus__111874__D92-212

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04913.18 best	Baculo_Y142	203.1	9.50e-60	100.0%	33.9%

D2 high residues 351-459

PDB

Domain cluster: rep: p49__YP_009552151__Malacosoma_neustria_nucleopolyhedrovirus__38012__D349-459

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04913.18 best	Baculo_Y142	135.5	3.10e-39	100.0%	24.4%

D3 medium residues 6-69

PDB

Domain cluster: rep: hypothetical_protein_SlsnVgp009__YP_009505818__Spodoptera_littoralis_nucleopolyhedrovirus__10456__D12-76

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04913.18 best	Baculo_Y142	54.0	1.70e-14	84.4%	12.6%

D4 medium residues 223-265_290-310

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04913.18 best	Baculo_Y142	57.2	1.80e-15	98.4%	12.9%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4r60A01	3.40.350.10	Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain	0.63	45.0	3.46e-01	78.1%	84.0%
1g03A00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.59	42.0	3.41e-01	76.6%	81.3%
3qtgA03	3.40.1380.20	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain	0.57	40.0	3.46e-01	76.6%	92.2%
1t8sA02	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.57	43.0	2.87e-01	85.9%	85.8%
4hvmB01	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.56	39.0	2.92e-01	76.6%	73.4%
2i4lA01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.56	46.0	3.04e-01	100.0%	58.2%
6vudA02	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.52	35.0	3.42e-01	90.6%	61.3%
1d5aA03	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.51	40.0	3.03e-01	87.5%	65.2%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3890741	320.1.1.7 ↗	a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N	0.54	40.0	3.73e-01	89.1%	62.5%
3716821	320.1.1.0 ↗	a+b two layers › R3H domain-like › R3H domain › R3H domain	0.54	37.0	3.50e-01	89.1%	60.0%
5057765	4955.1.1.0 ↗	a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.53	40.0	3.72e-01	90.6%	65.0%
5029234	304.120.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI	0.52	32.0	3.44e-01	82.8%	70.9%
4964736	7584.1.1.1 ↗	a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding	0.51	36.0	2.77e-01	76.6%	61.2%
3600265	320.1.1.0 ↗	a+b two layers › R3H domain-like › R3H domain › R3H domain	0.51	38.0	3.12e-01	79.7%	73.9%
4961649	101.1.2.650 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7343	0.50	34.0	3.29e-01	71.9%	94.7%

D5 medium residues 266-289_311-347

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04913.18 best	Baculo_Y142	36.2	4.20e-09	63.9%	8.3%