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P4

Euk-Vir

Maize_yellow_dwarf_virus_RMV

P4__YP_008083743__Maize_yellow_dwarf_virus_RMV__2170101

Identity

Accession:
YP_008083743 ↗
Protein ID:
P4
Kingdom:
euk

Quality

63.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Maize_yellow_dwarf_virus_RMV

TaxID: 2170101

Cluster

View cluster (33 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-120_160-171
PDB
Domain cluster: rep: movement_protein__YP_009198214__Phasey_bean_mild_yellows_virus__1756832__D6-96_102-104
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01659.23 best Luteo_Vpg 140.2 5.30e-41 92.7% 83.6%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.70 51.0 4.83e-01 100.0% 63.3%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.69 57.0 3.59e-01 86.3% 24.9%
2hdiA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.67 55.0 3.61e-01 85.5% 23.2%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.67 49.0 4.59e-01 79.8% 62.8%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.66 54.0 3.47e-01 85.5% 29.4%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.66 53.0 3.44e-01 84.7% 33.7%
3cslA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.66 53.0 3.30e-01 84.7% 21.3%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.65 57.0 5.07e-01 100.0% 66.7%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.64 58.0 4.22e-01 100.0% 59.5%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.63 43.0 4.22e-01 86.3% 65.6%
1nqfA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.63 51.0 3.44e-01 84.7% 32.4%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.61 50.0 4.18e-01 85.5% 71.6%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.61 55.0 3.96e-01 98.4% 46.5%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 55.0 4.12e-01 100.0% 62.5%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.60 27.0 3.52e-01 79.8% 76.9%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.59 55.0 4.05e-01 100.0% 61.9%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.58 36.0 4.18e-01 81.5% 87.4%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.58 43.0 4.22e-01 77.4% 89.7%
7vu0A01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 53.0 3.61e-01 100.0% 48.7%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 52.0 3.73e-01 100.0% 46.7%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.57 50.0 3.89e-01 92.7% 68.3%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.57 47.0 3.16e-01 90.3% 71.5%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.56 44.0 3.76e-01 83.1% 83.3%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 40.0 3.85e-01 90.3% 64.7%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 32.0 4.05e-01 79.8% 93.4%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 50.0 3.50e-01 100.0% 98.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 42.0 3.71e-01 83.1% 71.5%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.55 49.0 3.69e-01 100.0% 85.4%
1b78A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.54 38.0 3.39e-01 74.2% 78.8%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.53 39.0 2.93e-01 75.8% 96.3%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.53 45.0 3.54e-01 91.9% 68.0%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 38.0 4.00e-01 88.7% 86.1%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.52 46.0 3.74e-01 100.0% 82.0%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.59e-01 75.8% 65.9%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.50 44.0 3.91e-01 100.0% 92.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3875809 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.71 52.0 4.70e-01 75.8% 61.2%
3391818 3070.2.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain 0.71 48.0 5.31e-01 80.6% 85.9%
4132216 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.70 58.0 3.56e-01 85.5% 27.1%
3056279 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.70 51.0 4.63e-01 75.8% 62.0%
3534691 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.69 51.0 4.59e-01 75.8% 61.2%
3970531 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.68 55.0 3.44e-01 85.5% 33.7%
4416793 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.67 61.0 4.13e-01 96.8% 87.4%
4025861 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.66 54.0 4.77e-01 84.7% 70.0%
4668983 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.66 54.0 4.88e-01 84.7% 71.9%
4524066 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.66 54.0 3.42e-01 86.3% 30.6%
4618904 5084.5.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.65 57.0 3.95e-01 92.7% 75.0%
3980016 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.64 47.0 4.50e-01 79.0% 66.4%
3975352 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.64 48.0 4.41e-01 80.6% 62.1%
4419134 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 47.0 3.53e-01 79.8% 32.8%
3925444 5087.3.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.63 56.0 4.69e-01 96.8% 89.5%
4020798 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.61 47.0 3.76e-01 80.6% 64.1%
3717466 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.61 50.0 4.26e-01 84.7% 75.3%
3398781 5087.3.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.61 58.0 4.30e-01 100.0% 80.4%
5080405 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.61 49.0 4.48e-01 85.5% 69.5%
3386436 5084.4.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 0.61 48.0 3.78e-01 83.9% 44.9%
3945018 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.60 52.0 3.60e-01 92.7% 44.9%
3803010 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.59 51.0 3.98e-01 91.1% 88.6%
4027955 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.59 54.0 3.79e-01 97.6% 87.5%
3594654 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.58 54.0 3.81e-01 100.0% 82.2%
3395729 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 43.0 3.98e-01 100.0% 60.0%
3611705 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 54.0 3.78e-01 100.0% 82.4%
3965061 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.58 44.0 3.46e-01 79.8% 40.4%
4582939 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.57 51.0 3.81e-01 100.0% 94.8%
3513646 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.57 45.0 3.06e-01 83.9% 36.3%
4102065 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.56 49.0 3.87e-01 99.2% 93.5%
3968185 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.55 44.0 3.03e-01 85.5% 61.1%
4383723 5087.3.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.55 49.0 3.65e-01 96.8% 88.2%
3965708 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.55 51.0 4.03e-01 100.0% 85.0%
3504023 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.55 43.0 3.48e-01 85.5% 67.2%
3839133 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.54 50.0 3.47e-01 100.0% 60.0%
3838722 5084.3.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 0.52 45.0 3.36e-01 93.5% 63.4%
4174055 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.52 39.0 3.35e-01 76.6% 53.3%
3349123 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.52 41.0 2.82e-01 84.7% 42.7%
3980621 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.52 46.0 3.85e-01 98.4% 93.0%
5075360 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 46.0 4.52e-01 99.2% 92.6%
3840054 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.51 41.0 3.98e-01 85.5% 82.9%
5056621 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 36.0 3.35e-01 71.8% 70.3%
3944680 5084.5.3.7 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › BCSC_C 0.51 43.0 3.16e-01 94.4% 65.3%
3975988 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.50 44.0 3.57e-01 100.0% 66.9%
1102013 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.50 45.0 3.86e-01 100.0% 74.9%
3366806 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.50 40.0 3.24e-01 85.5% 72.2%
5048005 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.50 45.0 3.78e-01 100.0% 84.2%