←Back to structures

P4a_precursor

Euk-Vir

Western_grey_kangaroopox_virus

P4a_precursor__YP_010085236__Western_grey_kangaroopox_virus__1566307

Identity

Accession:: YP_010085236 ↗
Protein ID:: P4a_precursor
Kingdom:: euk

Quality

70.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Macropopoxvirus› Western_grey_kangaroopox_virus

TaxID: 1566307

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 441-455_633-705

PDB

D2 medium residues 37-168_363-435

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03395.20 best	Pox_P4A	131.4	3.60e-38	65.8%	14.7%
PF03395.20	Pox_P4A	123.0	1.30e-35	35.6%	8.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2a07J00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	23.0	3.36e-01	93.2%	97.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3257775	4988.1.1.0 ↗	a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain	0.60	21.0	3.70e-01	95.1%	100.0%
3718390	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	22.0	3.63e-01	96.1%	94.7%

D3 medium residues 246-346

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03395.20 best	Pox_P4A	84.5	5.60e-24	100.0%	11.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ossC00	2.30.30.830	Mainly Beta › Roll › SH3 type barrels. ›	0.57	28.0	3.42e-01	84.2%	72.3%
3p8aA02	2.60.40.4320	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	28.0	2.96e-01	79.2%	55.6%
2ci8A01	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.51	27.0	3.36e-01	76.2%	89.3%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3244960	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.61	27.0	3.06e-01	71.3%	53.3%
3976834	4.1.1.156 ↗	beta barrels › SH3 › SH3 › SH3 › DUF2158	0.56	24.0	3.31e-01	86.1%	78.0%
3335386	2003.1.2.15 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3	0.52	36.0	2.47e-01	70.3%	96.4%
3684646	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	29.0	3.19e-01	81.2%	66.3%

D4 medium residues 457-509

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03395.20 best	Pox_P4A	80.2	1.10e-22	100.0%	6.0%

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5wp3B00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.81	58.0	4.58e-01	75.5%	68.6%
2hxiB02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.67	53.0	3.98e-01	86.8%	98.5%
4aflA00	6.10.140.1740	Special › Helix non-globular › Helix Hairpins ›	0.65	46.0	3.74e-01	75.5%	57.8%
4m70B00	1.10.246.200	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain	0.64	49.0	4.20e-01	88.7%	84.6%
7og5F01	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.62	44.0	3.28e-01	77.4%	26.8%
3s6jE02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.62	48.0	4.39e-01	83.0%	100.0%
6qv3A05	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	42.0	3.49e-01	71.7%	83.9%
5lnkA00	1.20.58.1610	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	0.61	44.0	3.46e-01	75.5%	40.0%
7jv7B01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.60	45.0	3.42e-01	84.9%	34.9%
1ffyA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.58	47.0	2.82e-01	90.6%	13.8%
7b9cA02	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.58	39.0	2.43e-01	73.6%	10.6%
2yi9A02	1.10.287.540	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.57	39.0	3.98e-01	71.7%	80.8%
3g36B00	1.20.890.10	Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain	0.57	44.0	4.51e-01	92.5%	90.2%
1b72A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.57	40.0	3.77e-01	92.5%	60.3%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.54	43.0	3.11e-01	86.8%	40.1%
1nt2B02	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.53	37.0	3.48e-01	73.6%	58.2%
8b6jF01	1.10.287.20	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain	0.51	41.0	3.84e-01	90.6%	76.1%
1vwxQ00	3.100.10.10	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 ›	0.51	40.0	2.88e-01	94.3%	27.8%
1vg5A00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.50	33.0	3.03e-01	81.1%	49.3%

ECOD (35)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3361803	632.3.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain	0.83	60.0	6.19e-01	77.4%	88.0%
4092193	3755.4.1.53 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › CemA	0.78	57.0	4.06e-01	79.2%	40.6%
4012233	4957.1.1.0 ↗	a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit	0.76	59.0	3.88e-01	84.9%	40.5%
3700717	70.3.1.1 ↗	beta barrels › beta-clip › SET domain-like › SET domain-like › SET	0.71	50.0	3.24e-01	73.6%	65.8%
3716257	1189.1.1.0 ↗	alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor	0.67	51.0	3.82e-01	83.0%	82.2%
4028664	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.65	46.0	3.83e-01	75.5%	53.7%
4569675	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.65	50.0	4.01e-01	83.0%	43.8%
3516645	301.6.1.1 ↗	a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C	0.65	44.0	2.96e-01	71.7%	34.0%
3492889	11.2.1.19 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657	0.65	51.0	3.24e-01	90.6%	56.1%
5007660	101.1.1.187 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_33	0.64	47.0	4.50e-01	92.5%	67.7%
4937380	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.63	49.0	4.39e-01	84.9%	89.3%
3583210	5.1.2.2 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40	0.63	54.0	3.81e-01	100.0%	99.4%
3732977	2486.1.1.3 ↗	a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans	0.63	49.0	2.83e-01	86.8%	36.1%
3416533	614.1.1.0 ↗	alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain	0.62	44.0	4.31e-01	77.4%	75.0%
3232180	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	42.0	2.76e-01	71.7%	35.1%
3619616	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.61	44.0	3.83e-01	77.4%	72.9%
3484360	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	46.0	4.28e-01	84.9%	71.4%
3480389	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	42.0	3.76e-01	75.5%	52.5%
3246596	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.60	40.0	3.70e-01	83.0%	50.7%
3244955	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.60	40.0	3.83e-01	73.6%	56.9%
3874841	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.59	40.0	3.84e-01	83.0%	58.5%
3967936	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.59	46.0	4.18e-01	86.8%	77.3%
3783785	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.59	40.0	3.71e-01	81.1%	54.3%
3933062	622.1.1.14 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › Proton_antipo_M	0.59	42.0	3.79e-01	75.5%	54.7%
3278143	1075.3.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold	0.58	48.0	3.04e-01	98.1%	95.5%
3686904	2486.1.1.3 ↗	a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans	0.58	42.0	2.91e-01	79.2%	22.1%
3228638	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.58	46.0	2.85e-01	94.3%	32.5%
4024078	3981.1.1.4 ↗	alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › COX6B	0.56	42.0	3.99e-01	88.7%	72.9%
3478184	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.56	38.0	3.22e-01	83.0%	39.0%
3751844	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.55	39.0	3.38e-01	88.7%	44.2%
3933833	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.55	39.0	3.61e-01	83.0%	55.7%
3484058	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.53	37.0	3.29e-01	84.9%	47.1%
4282585	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.53	40.0	3.57e-01	90.6%	57.6%
3886591	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.51	39.0	3.56e-01	90.6%	67.5%
3894143	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.51	39.0	3.53e-01	90.6%	66.3%

D5 medium residues 510-601_619-630

PDB

Domain cluster: rep: P4a_precursor__YP_009480637__Sea_otter_poxvirus__1416741__D521-601_638-649

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03395.20 best	Pox_P4A	141.6	3.10e-41	97.1%	10.1%

D6 medium residues 718-881

PDB