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P4b_precursor
Euk-VirChoristoneura_rosaceana_entomopoxvirus_L
P4b_precursor__YP_008004566__Choristoneura_rosaceana_entomopoxvirus_L__1293539
Identity
- Accession:
- YP_008004566 ↗
- Protein ID:
- P4b_precursor
- Kingdom:
- euk
Quality
51.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Betaentomopoxvirus›
Choristoneura_rosaceana_entomopoxvirus_'L'
TaxID: 1293539
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 214-298_313-375
D2
medium
residues 108-179
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 50.0 | 4.48e-01 | 73.6% | 99.0% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.67 | 55.0 | 5.31e-01 | 91.7% | 81.9% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.67 | 47.0 | 3.66e-01 | 73.6% | 83.8% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.67 | 56.0 | 4.58e-01 | 95.8% | 50.4% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.67 | 53.0 | 4.56e-01 | 87.5% | 55.1% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.67 | 50.0 | 4.32e-01 | 87.5% | 49.6% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.66 | 52.0 | 4.55e-01 | 87.5% | 71.7% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.66 | 53.0 | 5.54e-01 | 90.3% | 100.0% |
| 1f14A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 39.0 | 2.84e-01 | 70.8% | 21.9% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 45.0 | 3.61e-01 | 75.0% | 86.6% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 47.0 | 4.46e-01 | 81.9% | 93.1% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 38.0 | 4.29e-01 | 79.2% | 86.0% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 46.0 | 4.45e-01 | 80.6% | 98.8% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 55.0 | 4.60e-01 | 98.6% | 99.2% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.62 | 49.0 | 4.82e-01 | 91.7% | 80.2% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 44.0 | 4.20e-01 | 76.4% | 67.8% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 42.0 | 3.53e-01 | 76.4% | 51.6% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 50.0 | 4.47e-01 | 100.0% | 71.3% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 47.0 | 3.77e-01 | 87.5% | 49.6% |
| 1txuA02 | 1.20.1050.80 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain | 0.56 | 45.0 | 3.50e-01 | 88.9% | 45.0% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.55 | 49.0 | 4.42e-01 | 97.2% | 75.8% |
| 1fpzC00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 46.0 | 3.56e-01 | 97.2% | 66.9% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.55 | 44.0 | 3.95e-01 | 93.1% | 70.4% |
| 2hsnA02 | 1.20.1050.110 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 36.0 | 3.21e-01 | 87.5% | 46.7% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.53 | 47.0 | 4.30e-01 | 97.2% | 92.4% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 39.0 | 3.01e-01 | 79.2% | 57.9% |
| 1f5oA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 43.0 | 3.42e-01 | 91.7% | 51.7% |
| 2bk9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 44.0 | 3.44e-01 | 93.1% | 49.7% |
| 3kzwA02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 46.0 | 2.99e-01 | 100.0% | 95.1% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.51 | 38.0 | 2.98e-01 | 86.1% | 33.7% |
| 4gieA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.51 | 42.0 | 2.87e-01 | 94.4% | 95.5% |
| 6tblB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 37.0 | 3.19e-01 | 79.2% | 50.5% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3173265 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.73 | 56.0 | 5.08e-01 | 84.7% | 100.0% |
| 5045223 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 63.0 | 5.86e-01 | 98.6% | 78.9% |
| 3169408 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.72 | 58.0 | 5.88e-01 | 88.9% | 94.3% |
| 4932863 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.71 | 57.0 | 5.57e-01 | 94.4% | 81.2% |
| 3686953 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.71 | 57.0 | 5.82e-01 | 90.3% | 94.3% |
| 3837701 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.71 | 54.0 | 5.66e-01 | 83.3% | 93.8% |
| 3816224 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.71 | 58.0 | 5.88e-01 | 95.8% | 94.3% |
| 3932090 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.70 | 60.0 | 5.83e-01 | 98.6% | 93.8% |
| 3265877 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.69 | 54.0 | 5.63e-01 | 86.1% | 96.9% |
| 5039859 | 6035.1.1.0 ↗ | alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain | 0.69 | 50.0 | 4.70e-01 | 80.6% | 62.2% |
| 3708809 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 53.0 | 5.56e-01 | 84.7% | 100.0% |
| 3723084 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.69 | 52.0 | 5.30e-01 | 81.9% | 98.6% |
| 5003619 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.67 | 46.0 | 4.86e-01 | 79.2% | 80.0% |
| 5068621 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.67 | 50.0 | 4.97e-01 | 86.1% | 78.7% |
| 5057376 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.66 | 47.0 | 4.52e-01 | 75.0% | 83.5% |
| 3246361 | 101.1.17.18 ↗ | alpha arrays › HTH › HTH › FF domain › FF_PRPF40A | 0.66 | 50.0 | 5.19e-01 | 81.9% | 93.8% |
| 3938334 | 101.1.17.18 ↗ | alpha arrays › HTH › HTH › FF domain › FF_PRPF40A | 0.65 | 51.0 | 5.18e-01 | 84.7% | 88.6% |
| 5005257 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.65 | 57.0 | 4.33e-01 | 98.6% | 49.4% |
| 3711217 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.65 | 51.0 | 5.28e-01 | 87.5% | 98.5% |
| 4437630 | 3705.1.1.0 ↗ | alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) | 0.64 | 49.0 | 4.97e-01 | 83.3% | 85.7% |
| 4995687 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.64 | 46.0 | 4.95e-01 | 76.4% | 95.0% |
| 5035650 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.64 | 47.0 | 4.79e-01 | 79.2% | 92.9% |
| 5022018 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.64 | 47.0 | 4.75e-01 | 87.5% | 80.0% |
| 4060266 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.64 | 55.0 | 4.11e-01 | 93.1% | 44.1% |
| 3927925 | 101.6.1.0 ↗ | alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C | 0.64 | 51.0 | 5.17e-01 | 88.9% | 100.0% |
| 3322242 | 7000.1.1.2 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › RBD_LARS1 | 0.64 | 48.0 | 4.74e-01 | 80.6% | 80.0% |
| 4580730 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.63 | 48.0 | 5.17e-01 | 83.3% | 100.0% |
| 5018716 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.63 | 42.0 | 4.25e-01 | 84.7% | 70.0% |
| 4252854 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.63 | 47.0 | 4.70e-01 | 83.3% | 81.3% |
| 3607576 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.63 | 47.0 | 4.93e-01 | 81.9% | 100.0% |
| 4213400 | 592.2.1.9 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › PP1_inhibitor | 0.62 | 43.0 | 4.17e-01 | 72.2% | 88.7% |
| 3914125 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.62 | 46.0 | 3.64e-01 | 79.2% | 78.6% |
| 4116078 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 47.0 | 4.66e-01 | 83.3% | 93.3% |
| 5048198 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.61 | 47.0 | 4.69e-01 | 86.1% | 85.3% |
| 4180109 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 48.0 | 4.49e-01 | 87.5% | 75.6% |
| 4381449 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 46.0 | 4.70e-01 | 84.7% | 94.3% |
| 1144783 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.60 | 44.0 | 3.40e-01 | 76.4% | 51.2% |
| 4973692 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.60 | 43.0 | 3.95e-01 | 79.2% | 59.0% |
| 5044572 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.59 | 51.0 | 4.43e-01 | 91.7% | 96.2% |
| 3862729 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.59 | 46.0 | 3.51e-01 | 84.7% | 46.9% |
| 4231800 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 4.15e-01 | 83.3% | 78.9% |
| 3992442 | 592.7.1.1 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 | 0.59 | 45.0 | 4.35e-01 | 91.7% | 71.8% |
| 4946543 | 2004.1.3.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR_N | 0.59 | 44.0 | 3.24e-01 | 86.1% | 29.7% |
| 3947373 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.59 | 46.0 | 2.99e-01 | 84.7% | 53.8% |
| 3967499 | 601.33.1.23 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › IcmF-related | 0.59 | 50.0 | 3.76e-01 | 98.6% | 54.7% |
| 3273126 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.58 | 47.0 | 3.54e-01 | 91.7% | 45.9% |
| 3676992 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 41.0 | 2.75e-01 | 79.2% | 18.3% |
| 3995656 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.57 | 46.0 | 3.58e-01 | 88.9% | 51.9% |
| 4948530 | 2007.2.3.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P | 0.56 | 47.0 | 3.73e-01 | 94.4% | 73.3% |
| 4985660 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.55 | 45.0 | 3.24e-01 | 91.7% | 32.2% |
| 3239957 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.54 | 42.0 | 3.37e-01 | 91.7% | 71.8% |
| 4867503 | 7563.1.1.6 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › LSDAT_euk | 0.53 | 46.0 | 3.01e-01 | 100.0% | 85.3% |
| 3233966 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.53 | 41.0 | 3.23e-01 | 86.1% | 90.9% |
| 3723517 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.53 | 35.0 | 3.31e-01 | 75.0% | 57.6% |
| 3359419 | 185.1.1.4 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Prolamin_like | 0.52 | 38.0 | 3.69e-01 | 80.6% | 69.4% |
| 3789515 | 101.1.1.10 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ARID | 0.52 | 40.0 | 3.42e-01 | 91.7% | 62.9% |
| 4030342 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.51 | 37.0 | 2.24e-01 | 88.9% | 9.5% |
| 4002021 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.51 | 44.0 | 3.28e-01 | 98.6% | 38.8% |
| 4944449 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.51 | 46.0 | 3.53e-01 | 100.0% | 57.0% |
| 3236092 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.51 | 37.0 | 3.67e-01 | 81.9% | 82.5% |
D3
medium
residues 377-443_472-524_540-553
D4
medium
residues 525-539_554-667