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P74

Euk-Vir

Homarus_gammarus_nudivirus

P74__YP_010087703__Homarus_gammarus_nudivirus__2509616

Identity

Accession:: YP_010087703 ↗
Protein ID:: P74
Kingdom:: euk

Quality

66.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Gammanudivirus› Homarus_gammarus_nudivirus

TaxID: 2509616

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70_268-287_537-570

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2od6C00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	36.0	3.83e-01	89.2%	81.3%
3bn7A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	35.0	3.78e-01	92.5%	82.4%
5xzqF00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	36.0	3.80e-01	91.7%	84.5%
1j2vA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	30.0	3.27e-01	86.7%	69.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4474711	3747.1.1.2 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C	0.55	40.0	4.24e-01	99.2%	85.7%
3971859	3747.1.1.2 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C	0.55	42.0	4.39e-01	100.0%	90.0%
4145438	3747.1.1.3 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C	0.54	40.0	4.30e-01	100.0%	92.0%
4036154	3747.1.1.2 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C	0.53	41.0	4.27e-01	99.2%	90.0%
4191440	304.3.1.11 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE	0.53	31.0	3.33e-01	71.7%	64.8%
3970911	304.3.1.11 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE	0.53	31.0	3.33e-01	71.7%	64.8%
3385473	3747.1.1.2 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C	0.52	41.0	4.27e-01	100.0%	92.7%
4581683	3747.1.1.2 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C	0.50	40.0	4.13e-01	100.0%	90.4%
3489671	309.1.1.0 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase	0.50	39.0	3.33e-01	100.0%	47.9%

D2 high residues 609-687

PDB

D3 medium residues 73-162

PDB

Domain cluster: rep: P74__YP_008378373__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D69-138

D4 medium residues 163-262

PDB

Domain cluster: rep: p74__YP_009552156__Malacosoma_neustria_nucleopolyhedrovirus__38012__D161-252

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08404.16 best	Baculo_p74_N	35.4	9.30e-09	97.0%	25.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3g27A01	3.30.50.20	Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › prophage-derive protein ybcO	0.52	27.0	3.20e-01	78.0%	74.2%

D5 medium residues 412-515

PDB