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P87
Euk-VirCalibrachoa_mottle_virus
P87__YP_008378651__Calibrachoa_mottle_virus__204928
Identity
- Accession:
- YP_008378651 ↗
- Protein ID:
- P87
- Kingdom:
- euk
Quality
77.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Tolucaviricetes›
Tolivirales›
Tombusviridae›
Alphacarmovirus›
Calibrachoa_mottle_virus
TaxID: 204928
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 621-739
Domain cluster:
rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 97.3 | 1.30e-27 | 99.2% | 24.7% |
D2
medium
residues 255-328_389-425_515-534
Domain cluster:
rep: hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823__D348-350_352-432_502-513
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 40.3 | 2.40e-10 | 48.1% | 10.5% |
| PF00998.29 | RdRP_3 | 51.9 | 7.50e-14 | 36.6% | 9.3% |
D3
medium
residues 329-354_426-514_535-564
Domain cluster:
rep: hypothetical_protein_2__YP_009342291__Wenzhou_tombus-like_virus_5__1923675__D1-41_111-124_164-201_217-244
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 129.4 | 2.30e-37 | 63.4% | 18.3% |
| PF00998.29 | RdRP_3 | 33.5 | 2.90e-08 | 20.7% | 5.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8fbcA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 46.0 | 3.40e-01 | 81.4% | 75.4% |
| 1jo0A00 | 3.30.110.60 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like | 0.55 | 35.0 | 4.11e-01 | 97.2% | 94.8% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 26.0 | 3.18e-01 | 83.4% | 75.3% |
| 5tgtA02 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 28.0 | 3.03e-01 | 84.8% | 61.8% |
D4
medium
residues 565-620
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 73.4 | 2.30e-20 | 100.0% | 11.5% |