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P87

Euk-Vir

Pseudoplusia_includens_SNPV_IE

P87__YP_009117008__Pseudoplusia_includens_SNPV_IE__1592335

Identity

Accession:: YP_009117008 ↗
Protein ID:: P87
Kingdom:: euk

Quality

68.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Pseudoplusia_includens_SNPV_IE

TaxID: 1592335

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-82

PDB

D2 high residues 110-187

PDB

Domain cluster: rep: vp80__YP_009011137__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D138-214

D3 high residues 191-261

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ggyA00	1.20.1260.60	Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1	0.67	57.0	4.31e-01	100.0%	78.0%
4jiuA00	3.30.2010.10	Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain"	0.59	45.0	4.02e-01	83.1%	74.3%
2o3fA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	47.0	4.51e-01	88.7%	84.1%
3iwfB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	45.0	4.25e-01	90.1%	100.0%
1a49A01	3.40.1380.20	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain	0.55	42.0	3.33e-01	100.0%	36.4%
3rpmA02	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.52	37.0	3.54e-01	88.7%	62.4%
1rfyB00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.52	31.0	2.94e-01	93.0%	47.7%
1tzbA02	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.50	36.0	3.05e-01	78.9%	52.5%
2jfqA02	3.40.50.1860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	39.0	3.48e-01	90.1%	74.6%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3741297	633.31.1.0 ↗	alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	0.65	53.0	5.40e-01	93.0%	100.0%
3588019	633.31.1.0 ↗	alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	0.64	51.0	5.21e-01	91.5%	97.1%
1828185	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.64	45.0	3.08e-01	76.1%	76.5%
3954896	3636.1.1.0 ↗	a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain	0.61	50.0	4.18e-01	94.4%	74.1%
2555	101.1.1.11 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_6	0.60	46.0	4.49e-01	85.9%	81.9%
4386248	101.1.1.16 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA	0.60	46.0	4.35e-01	81.7%	82.4%
5012037	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.59	42.0	3.94e-01	76.1%	71.1%
3228670	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.59	42.0	3.56e-01	77.5%	70.0%
4377139	101.1.1.11 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_6	0.59	46.0	4.46e-01	87.3%	83.7%
4009366	2004.1.1.120 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII	0.58	48.0	3.56e-01	98.6%	87.7%
3941971	101.1.1.11 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_6	0.58	47.0	4.29e-01	91.5%	73.0%
3979850	101.1.1.11 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_6	0.58	46.0	4.43e-01	90.1%	82.4%
3943585	101.1.1.11 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_6	0.56	44.0	4.26e-01	90.1%	82.4%
3359252	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.53	39.0	3.30e-01	83.1%	69.6%
3656282	7588.1.1.0 ↗	a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.51	34.0	3.49e-01	77.5%	71.4%

D4 high residues 378-561

PDB

Domain cluster: rep: VP80_capsid,_VP87__YP_009666405__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D664-831

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07267.18 best	Nucleo_P87	105.8	3.90e-30	99.5%	24.6%