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P8
Euk-VirTomato_chlorosis_virus
P8__YP_293700__Tomato_chlorosis_virus__67754
Identity
- Accession:
- YP_293700 ↗
- Protein ID:
- P8
- Kingdom:
- euk
Quality
73.4
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Crinivirus›
Tomato_chlorosis_virus
TaxID: 67754
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-50
Domain cluster:
rep: p6__YP_009507954__Diodia_vein_chlorosis_virus__656520__D4-52
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.70 | 48.0 | 3.90e-01 | 71.4% | 96.4% |
| 3ssoA01 | 3.30.1050.30 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › | 0.65 | 49.0 | 3.51e-01 | 83.7% | 63.6% |
| 1ef1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 42.0 | 3.58e-01 | 71.4% | 98.7% |
| 1wmhB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 42.0 | 3.51e-01 | 71.4% | 96.3% |
| 1k28D04 | 3.30.1920.40 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › | 0.61 | 50.0 | 4.68e-01 | 98.0% | 87.5% |
| 7k7yG02 | 1.20.1120.10 | Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" | 0.61 | 50.0 | 3.00e-01 | 93.9% | 66.8% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 41.0 | 3.45e-01 | 71.4% | 98.8% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 41.0 | 3.61e-01 | 71.4% | 76.7% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 41.0 | 3.50e-01 | 71.4% | 98.7% |
| 4hwiB01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 40.0 | 3.59e-01 | 71.4% | 98.6% |
| 1xi7A00 | 4.10.40.20 | Few Secondary Structures › Irregular › Omega-AgatoxinV › | 0.59 | 36.0 | 3.73e-01 | 100.0% | 63.8% |
| 4kdiD00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 39.0 | 3.43e-01 | 71.4% | 98.7% |
| 2kanA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 39.0 | 3.48e-01 | 71.4% | 97.3% |
| 2kd0A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 39.0 | 3.49e-01 | 71.4% | 98.6% |
| 3sonA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 46.0 | 3.48e-01 | 100.0% | 79.5% |
| 3i9xA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 47.0 | 3.37e-01 | 100.0% | 80.9% |
| 3griB01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.55 | 42.0 | 3.44e-01 | 89.8% | 94.5% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.54 | 35.0 | 3.12e-01 | 100.0% | 43.7% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.53 | 38.0 | 3.27e-01 | 75.5% | 91.0% |
| 2ivdA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.52 | 40.0 | 2.67e-01 | 81.6% | 42.9% |
| 1bk4A02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.52 | 45.0 | 3.30e-01 | 100.0% | 87.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932403 | 239.1.1.2 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_S6e | 0.67 | 47.0 | 3.41e-01 | 73.5% | 92.0% |
| 3591547 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.64 | 44.0 | 3.34e-01 | 71.4% | 76.4% |
| 3973343 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.64 | 51.0 | 4.73e-01 | 91.8% | 90.8% |
| 3508711 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.64 | 54.0 | 3.99e-01 | 98.0% | 83.6% |
| 3582435 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.63 | 43.0 | 3.43e-01 | 71.4% | 85.3% |
| 4946532 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 43.0 | 3.66e-01 | 71.4% | 97.5% |
| 4219659 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 51.0 | 3.94e-01 | 89.8% | 92.7% |
| 3176216 | 221.1.1.40 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 | 0.62 | 42.0 | 3.62e-01 | 71.4% | 96.0% |
| 3220404 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.60 | 42.0 | 2.95e-01 | 75.5% | 21.8% |
| 3891446 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.60 | 50.0 | 3.78e-01 | 100.0% | 70.0% |
| 3537996 | 221.1.1.45 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Par3_HAL_N_term | 0.59 | 40.0 | 3.30e-01 | 71.4% | 92.2% |
| 4405955 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.59 | 40.0 | 3.48e-01 | 71.4% | 75.0% |
| 3943932 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.59 | 43.0 | 3.59e-01 | 81.6% | 90.5% |
| 3965019 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.59 | 51.0 | 3.36e-01 | 100.0% | 86.4% |
| 3270795 | 221.1.1.40 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 | 0.58 | 39.0 | 3.44e-01 | 71.4% | 93.3% |
| 4025046 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.57 | 46.0 | 3.27e-01 | 100.0% | 64.2% |
| 3872921 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.56 | 46.0 | 3.57e-01 | 93.9% | 57.4% |
| 3548619 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.55 | 45.0 | 3.99e-01 | 93.9% | 81.3% |
| 4462886 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.55 | 43.0 | 3.38e-01 | 100.0% | 69.9% |
| 4017081 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 43.0 | 2.89e-01 | 100.0% | 39.6% |
| 3900729 | 221.1.1.176 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26749 | 0.55 | 37.0 | 3.21e-01 | 71.4% | 96.2% |
| 223827 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.53 | 38.0 | 3.25e-01 | 75.5% | 89.9% |
| 3232346 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 35.0 | 3.11e-01 | 71.4% | 94.7% |
| 3287007 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.51 | 38.0 | 2.71e-01 | 85.7% | 65.4% |
| 2106023 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.51 | 39.0 | 3.33e-01 | 100.0% | 86.1% |