P95_replicase

Euk-Vir

Pelargonium_leaf_curl_virus

P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280

Identity

73.4 mean pLDDT

Orthornavirae› Kitrinoviricota› Tolucaviricetes› Tolivirales› Tombusviridae› Tombusvirus› Pelargonium_leaf_curl_virus

TaxID: 35280

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 220-322

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009342274__Wenzhou_tombus-like_virus_3__1923673__D47-138

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08500.17 best	Tombus_P33	103.5	1.70e-29	90.3%	57.8%

D2 medium residues 69-120_151-188

PDB

D3 medium residues 326-330_332-359_371-387

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3967397	7503.1.1.8 ↗	a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136	0.53	42.0	3.05e-01	90.0%	66.0%
3867913	2003.1.9.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF	0.50	34.0	2.11e-01	74.0%	12.6%

D4 medium residues 388-410_468-489_560-692

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_3D__NP_740737__Parechovirus_A__1803956__D11-60_159-185_260-299

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	218.6	2.10e-64	75.3%	27.2%

D5 medium residues 425-467_490-526

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	53.7	2.10e-14	48.8%	7.8%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6lo8F01	1.10.287.810	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains	0.57	30.0	3.18e-01	100.0%	55.1%
4hfkB00	1.20.120.1620	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.55	35.0	3.34e-01	100.0%	52.0%
3dl1A01	1.10.472.150	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain	0.53	33.0	3.16e-01	97.5%	50.5%

D6 medium residues 527-559_693-852

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	125.2	4.30e-36	74.1%	30.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3pxpA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.52	22.0	2.94e-01	76.7%	72.0%