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P9
Euk-VirTomato_chlorosis_virus
P9__YP_293702__Tomato_chlorosis_virus__67754
Identity
- Accession:
- YP_293702 ↗
- Protein ID:
- P9
- Kingdom:
- euk
Quality
74.2
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Crinivirus›
Tomato_chlorosis_virus
TaxID: 67754
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-75
Domain cluster:
rep: unnamed_protein_product__YP_003002361__Lettuce_chlorosis_virus__642478__D3-73
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d0cB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 46.0 | 3.09e-01 | 79.5% | 34.7% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.62 | 46.0 | 4.59e-01 | 90.4% | 76.6% |
| 2okcB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.61 | 54.0 | 4.64e-01 | 100.0% | 85.0% |
| 3s5nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 43.0 | 2.92e-01 | 75.3% | 33.9% |
| 5dqqA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 43.0 | 3.59e-01 | 78.1% | 84.1% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.58 | 43.0 | 4.35e-01 | 97.3% | 78.4% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 42.0 | 3.84e-01 | 79.5% | 77.7% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 42.0 | 3.52e-01 | 78.1% | 77.2% |
| 4edgA01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.55 | 43.0 | 3.61e-01 | 87.7% | 100.0% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.55 | 34.0 | 3.13e-01 | 87.7% | 46.3% |
| 2fzlA02 | 6.10.140.1180 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 39.0 | 4.17e-01 | 83.6% | 96.8% |
| 4l7nA01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.53 | 47.0 | 3.78e-01 | 100.0% | 62.9% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 42.0 | 4.21e-01 | 100.0% | 85.9% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.52 | 31.0 | 3.06e-01 | 76.7% | 51.9% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.52 | 42.0 | 3.76e-01 | 90.4% | 64.5% |
| 2o6kA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.52 | 38.0 | 3.87e-01 | 91.8% | 81.9% |
| 4jocA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 40.0 | 2.64e-01 | 87.7% | 18.8% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.51 | 36.0 | 2.90e-01 | 76.7% | 93.3% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 33.0 | 3.50e-01 | 91.8% | 72.7% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.51 | 38.0 | 3.26e-01 | 80.8% | 56.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3528233 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 52.0 | 5.16e-01 | 100.0% | 78.7% |
| 5066086 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.62 | 45.0 | 3.76e-01 | 76.7% | 65.4% |
| 5009561 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.61 | 45.0 | 4.36e-01 | 80.8% | 95.3% |
| 3577448 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.61 | 42.0 | 4.01e-01 | 74.0% | 76.4% |
| 3878515 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.60 | 45.0 | 4.53e-01 | 97.3% | 76.0% |
| 4981630 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.60 | 43.0 | 4.08e-01 | 74.0% | 81.2% |
| 4008082 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.60 | 42.0 | 4.01e-01 | 75.3% | 77.8% |
| 3297509 | 148.1.3.318 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28551 | 0.60 | 35.0 | 3.57e-01 | 72.6% | 58.6% |
| 3989810 | 3291.1.1.5 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Relaxase_C | 0.58 | 40.0 | 3.76e-01 | 74.0% | 58.9% |
| 4032781 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.57 | 40.0 | 3.63e-01 | 74.0% | 65.7% |
| 4995476 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.57 | 39.0 | 3.56e-01 | 72.6% | 66.0% |
| 5021829 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.57 | 42.0 | 4.02e-01 | 83.6% | 66.7% |
| 5042171 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.56 | 40.0 | 3.59e-01 | 75.3% | 60.9% |
| 5033121 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.56 | 40.0 | 3.72e-01 | 75.3% | 72.6% |
| 3385808 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.56 | 37.0 | 3.29e-01 | 100.0% | 45.5% |
| 4153290 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.53 | 40.0 | 3.62e-01 | 80.8% | 70.0% |
| 5028848 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.53 | 40.0 | 2.60e-01 | 87.7% | 17.2% |
| 4510299 | 3660.1.1.0 ↗ | alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG | 0.50 | 38.0 | 3.82e-01 | 82.2% | 84.0% |