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PH2015_10_scaffold_0_prodigal-single.1__X__X__00035

Bact-Vir

PH2015_10_scaffold_0_prodigal-single.1__X__X__00035

Identity

Kingdom:
phage

Quality

85.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-128
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qmgA02 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.89 67.0 6.13e-01 100.0% 62.5%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.86 59.0 5.77e-01 100.0% 65.1%
3bdlA02 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 67.0 6.02e-01 100.0% 63.0%
1a2tA00 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.82 65.0 6.17e-01 100.0% 70.4%
3ntkB01 2.40.50.790 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.79 55.0 6.31e-01 100.0% 95.3%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 48.0 5.66e-01 98.3% 89.9%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 65.0 5.75e-01 100.0% 63.5%
5j39A01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 65.0 6.31e-01 100.0% 85.7%
3o2zF00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 47.0 5.58e-01 94.0% 97.4%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 47.0 4.91e-01 94.8% 69.7%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 43.0 5.27e-01 95.7% 94.5%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 38.0 4.90e-01 95.7% 92.3%
2je6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 45.0 5.14e-01 97.4% 87.5%
5ygbA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 65.0 6.18e-01 100.0% 91.7%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 43.0 4.91e-01 94.0% 87.4%
1a62A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 38.0 4.69e-01 94.8% 98.6%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 4.95e-01 97.4% 96.4%
2iciA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 40.0 4.72e-01 94.8% 97.4%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 37.0 3.93e-01 96.6% 66.7%
4qy7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 4.79e-01 94.0% 100.0%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 4.38e-01 95.7% 74.4%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.51 34.0 3.81e-01 91.4% 89.7%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385491 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.95 68.0 5.95e-01 100.0% 53.1%
3965688 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.93 68.0 6.36e-01 100.0% 63.7%
3642215 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.93 68.0 5.90e-01 100.0% 52.7%
3949229 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 72.0 6.62e-01 100.0% 66.9%
3261189 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 67.0 5.85e-01 100.0% 54.5%
3879038 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.89 61.0 6.30e-01 100.0% 73.6%
5054098 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 64.0 6.22e-01 100.0% 68.0%
3776626 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 63.0 5.70e-01 100.0% 56.4%
4928964 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 64.0 6.44e-01 100.0% 73.9%
3881118 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.89 59.0 6.75e-01 100.0% 87.8%
3564425 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.89 60.0 6.21e-01 100.0% 72.7%
3611847 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.87 67.0 5.79e-01 100.0% 55.2%
3713167 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.86 64.0 5.84e-01 100.0% 60.7%
3565765 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.86 62.0 5.76e-01 100.0% 61.4%
4180654 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.85 67.0 6.08e-01 99.1% 64.1%
4022903 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.85 68.0 5.93e-01 100.0% 59.4%
3609624 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.85 63.0 5.80e-01 100.0% 61.4%
5066799 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.85 69.0 7.18e-01 97.4% 89.8%
3596659 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.85 63.0 5.58e-01 100.0% 55.6%
3921697 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.84 60.0 6.15e-01 100.0% 76.4%
3576127 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.84 56.0 6.31e-01 100.0% 86.7%
4929215 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.84 62.0 6.17e-01 100.0% 73.3%
3194464 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.84 72.0 6.21e-01 100.0% 61.8%
3619812 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.84 59.0 4.68e-01 100.0% 39.5%
3785401 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.84 63.0 5.54e-01 100.0% 56.2%
3218843 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.83 56.0 6.47e-01 100.0% 92.9%
3277340 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.83 67.0 5.86e-01 100.0% 60.0%
3410967 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.82 56.0 6.14e-01 100.0% 84.2%
3416449 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.82 58.0 6.10e-01 100.0% 80.0%
3230056 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.82 54.0 5.75e-01 100.0% 75.2%
3573643 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.81 57.0 5.70e-01 100.0% 70.0%
3971135 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 63.0 5.96e-01 98.3% 68.9%
3485853 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 67.0 5.60e-01 100.0% 55.0%
4030587 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 66.0 5.74e-01 100.0% 59.4%
3738104 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 70.0 6.06e-01 100.0% 63.0%
4510334 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 62.0 6.06e-01 100.0% 73.6%
3409459 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.80 55.0 5.72e-01 100.0% 74.5%
3596660 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.80 59.0 5.58e-01 100.0% 65.2%
3621173 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.80 47.0 5.67e-01 94.8% 86.3%
5031365 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.80 70.0 5.58e-01 100.0% 51.2%
4075688 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.79 59.0 4.49e-01 100.0% 36.3%
3785399 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.79 61.0 5.50e-01 100.0% 61.3%
3807059 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.79 74.0 6.20e-01 100.0% 77.8%
3575960 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 46.0 5.69e-01 94.8% 90.7%
3799466 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 46.0 5.39e-01 94.8% 81.2%
4534120 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.78 68.0 5.35e-01 100.0% 48.8%
3261195 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.77 67.0 5.93e-01 100.0% 65.6%
3995180 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.77 65.0 5.25e-01 100.0% 49.8%
4026268 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.77 66.0 5.68e-01 100.0% 61.2%
3930254 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.77 67.0 6.00e-01 100.0% 68.4%
3577387 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.77 64.0 6.45e-01 100.0% 87.8%
4673831 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.76 69.0 5.95e-01 100.0% 64.7%
4950866 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.74 41.0 4.60e-01 95.7% 70.0%
5004633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 41.0 4.61e-01 95.7% 70.0%
4965290 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.74 68.0 6.12e-01 100.0% 74.0%
5006716 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.73 40.0 4.67e-01 95.7% 74.1%
3558931 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.73 65.0 5.75e-01 100.0% 68.1%
4525451 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.72 69.0 5.39e-01 100.0% 56.4%
5061616 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.72 53.0 6.00e-01 94.0% 97.8%
3337007 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.72 68.0 5.56e-01 100.0% 60.0%
3430247 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.71 46.0 4.83e-01 94.8% 72.1%
4218429 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.71 67.0 5.42e-01 100.0% 61.0%
4210874 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.71 45.0 5.21e-01 97.4% 88.2%
4945258 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 40.0 4.49e-01 94.8% 72.2%
4050613 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 46.0 5.37e-01 94.0% 92.9%
3628656 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.69 55.0 5.55e-01 100.0% 84.3%
3424595 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.69 65.0 5.32e-01 100.0% 71.8%
3630421 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.67 49.0 5.37e-01 94.8% 92.6%
4024020 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.67 47.0 5.16e-01 97.4% 88.4%
4228399 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.66 46.0 5.13e-01 97.4% 91.1%
3612341 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.66 47.0 5.17e-01 97.4% 89.5%
3959837 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 45.0 5.10e-01 95.7% 95.3%
4021136 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 46.0 5.06e-01 97.4% 88.4%
3606816 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 43.0 4.41e-01 95.7% 70.0%
4947064 2.1.1.362 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › KH_2 0.64 42.0 4.78e-01 97.4% 89.4%
3579004 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.63 55.0 5.41e-01 100.0% 86.4%
3183653 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.59 47.0 4.93e-01 100.0% 91.4%
3953600 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.54 38.0 3.96e-01 91.4% 80.0%
3244943 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 4.16e-01 96.6% 85.7%
5059785 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 35.0 4.17e-01 78.4% 97.5%
5025384 304.165.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › Ta1207 0.52 40.0 3.71e-01 100.0% 62.7%