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PH2015_10_scaffold_0_prodigal-single.1__X__X__00051

Bact-Vir

PH2015_10_scaffold_0_prodigal-single.1__X__X__00051

Identity

Kingdom:
phage

Quality

75.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-131
PDB
Domain cluster: rep: NC_008562.1__YP_851098.1__MaLMM01_gp084__00084__D63-136
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.62 45.0 3.52e-01 75.5% 83.5%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.60 42.0 3.36e-01 73.5% 78.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 35.0 3.34e-01 99.0% 50.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 29.0 3.57e-01 86.3% 84.5%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.54 40.0 3.21e-01 76.5% 72.0%
2rl8A00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 36.0 3.20e-01 70.6% 78.4%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 35.0 3.52e-01 70.6% 87.3%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.50 42.0 3.39e-01 91.2% 96.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945895 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 54.0 5.37e-01 72.5% 97.1%
3334148 3164.1.1.2 ↗ few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › SWIM 0.64 45.0 4.99e-01 71.6% 91.3%
3370807 386.1.1.372 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SWIM 0.63 45.0 4.47e-01 74.5% 82.6%
3713384 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.61 42.0 3.57e-01 71.6% 78.5%
4931925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.52e-01 79.4% 93.3%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.31e-01 89.2% 78.9%
4173307 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 33.0 2.69e-01 92.2% 31.1%
3328404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 27.0 3.63e-01 85.3% 90.6%
3699769 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.54 44.0 3.60e-01 87.3% 86.7%
3782826 4.1.1.39 ↗ beta barrels › SH3 › SH3 › SH3 › SHD1 0.53 29.0 3.29e-01 84.3% 72.0%
5053445 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 37.0 3.23e-01 75.5% 91.3%
3734499 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.50 35.0 3.50e-01 70.6% 88.3%
3935555 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.50 40.0 2.99e-01 87.3% 82.2%