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PH2015_10_scaffold_0_prodigal-single.1__X__X__00055
Bact-VirPH2015_10_scaffold_0_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
67.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 202-312
D2
medium
residues 24-85_172-201_329-398
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 41.0 | 4.59e-01 | 98.8% | 92.6% |
D3
medium
residues 86-171
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.56 | 34.0 | 3.59e-01 | 79.1% | 68.4% |
| 1z9hA02 | 6.20.200.30 | Special › Other non-globular › Defensin A-like › | 0.54 | 21.0 | 2.78e-01 | 73.3% | 58.1% |
| 4c23B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 47.0 | 3.47e-01 | 98.8% | 52.6% |
| 2uytA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 45.0 | 3.32e-01 | 98.8% | 48.8% |
| 3w7tA03 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 44.0 | 2.81e-01 | 95.3% | 41.1% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.50 | 38.0 | 4.16e-01 | 93.0% | 98.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 363486 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.61 | 22.0 | 2.87e-01 | 83.7% | 51.9% |
| 4002132 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 42.0 | 2.86e-01 | 97.7% | 20.0% |
| 3871096 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 45.0 | 3.14e-01 | 88.4% | 65.6% |
| 3882687 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 45.0 | 3.12e-01 | 90.7% | 66.7% |
| 3879800 | 601.3.1.8 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › IQUB | 0.56 | 35.0 | 2.98e-01 | 90.7% | 37.9% |
| 2806227 | 150.2.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Cobalamin adenosyltransferase › Cobalamin adenosyltransferase › Cob_adeno_trans | 0.56 | 42.0 | 3.34e-01 | 82.6% | 65.8% |
| 3523591 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 33.0 | 3.19e-01 | 97.7% | 50.0% |
| 3929494 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.55 | 41.0 | 2.86e-01 | 80.2% | 30.3% |
| 3343082 | 3981.1.1.2 ↗ | alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › PANTS-like | 0.55 | 35.0 | 3.98e-01 | 80.2% | 86.2% |
| 3530765 | 192.29.1.203 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › IQUB | 0.52 | 36.0 | 3.29e-01 | 89.5% | 53.9% |
| 3519143 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.52 | 38.0 | 2.69e-01 | 80.2% | 60.3% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.51 | 38.0 | 4.13e-01 | 93.0% | 97.2% |
| 3684771 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.51 | 40.0 | 3.40e-01 | 86.0% | 95.2% |