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PH2015_10_scaffold_0_prodigal-single.1__X__X__00223

Bact-Vir

PH2015_10_scaffold_0_prodigal-single.1__X__X__00223

Identity

Kingdom:
phage

Quality

90.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-70
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3veaA02 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.84 59.0 6.00e-01 75.9% 75.0%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.74 63.0 5.13e-01 100.0% 51.0%
3u6uC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.72 49.0 3.11e-01 70.4% 44.4%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 49.0 2.85e-01 72.2% 17.6%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.70 51.0 3.68e-01 77.8% 50.0%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.70 51.0 3.08e-01 100.0% 12.2%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 47.0 3.17e-01 70.4% 19.4%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 50.0 3.36e-01 77.8% 78.4%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.68 51.0 3.17e-01 79.6% 59.3%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.67 44.0 4.36e-01 77.8% 64.9%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.66 45.0 2.93e-01 70.4% 44.5%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.66 47.0 3.18e-01 74.1% 20.9%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 3.61e-01 83.3% 41.8%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.38e-01 75.9% 73.0%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 3.93e-01 74.1% 57.7%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.63 54.0 3.50e-01 100.0% 64.3%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.62 46.0 3.77e-01 79.6% 72.3%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 52.0 3.35e-01 100.0% 86.4%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.61 43.0 3.35e-01 75.9% 37.0%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.60e-01 92.6% 66.7%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.78e-01 96.3% 70.8%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.61 53.0 3.40e-01 100.0% 61.9%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.60 40.0 3.51e-01 77.8% 47.4%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.18e-01 92.6% 74.1%
1yx1A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 37.0 2.44e-01 70.4% 60.0%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.87e-01 88.9% 61.3%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 42.0 2.86e-01 87.0% 53.0%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 37.0 3.10e-01 72.2% 84.0%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 3.99e-01 92.6% 62.2%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.54 43.0 3.61e-01 88.9% 54.3%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 37.0 3.26e-01 74.1% 58.4%
1oyiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.71e-01 90.7% 69.4%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.69e-01 98.1% 59.5%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.50 38.0 3.35e-01 90.7% 54.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3806223 101.1.1.434 alpha arrays › HTH › HTH › Three-helical HTH › Cupin_1 0.87 59.0 4.95e-01 74.1% 44.7%
4943261 2004.1.1.188 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 0.79 56.0 3.84e-01 74.1% 22.9%
4183750 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.76 62.0 5.51e-01 98.1% 62.5%
3429600 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.73 50.0 3.76e-01 72.2% 40.8%
4029394 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.73 50.0 3.28e-01 70.4% 20.0%
3589866 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.72 52.0 4.47e-01 75.9% 64.7%
4940054 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 4.61e-01 83.3% 67.4%
3815375 5069.1.3.17 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF679 0.72 53.0 3.89e-01 79.6% 85.0%
3926333 5054.1.1.59 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.71 49.0 2.91e-01 72.2% 14.0%
3620102 5067.1.1.3 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.71 53.0 2.92e-01 81.5% 31.6%
3585256 304.28.1.9 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Patched 0.70 53.0 2.90e-01 81.5% 27.5%
4032391 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.69 51.0 4.37e-01 79.6% 64.7%
3406523 316.1.1.6 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.68 48.0 3.17e-01 74.1% 91.4%
3735991 109.4.1.526 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.68 52.0 2.94e-01 83.3% 10.2%
5073398 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.68 44.0 3.17e-01 79.6% 24.0%
3304324 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.67 48.0 3.50e-01 74.1% 83.0%
2966548 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.67 54.0 3.82e-01 92.6% 85.2%
3224479 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.67 52.0 3.15e-01 83.3% 32.7%
5022034 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.67 50.0 3.55e-01 81.5% 91.5%
3723153 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.66 47.0 2.73e-01 74.1% 46.7%
5064344 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.66 53.0 3.77e-01 87.0% 59.4%
3947139 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.66 48.0 3.05e-01 83.3% 23.4%
4014614 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.65 43.0 3.16e-01 87.0% 24.7%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 44.0 3.65e-01 70.4% 60.0%
3923920 148.1.1.8 alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa 0.64 49.0 4.07e-01 87.0% 81.9%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.64 56.0 3.48e-01 96.3% 67.9%
3587173 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 57.0 4.62e-01 96.3% 62.1%
4620061 4043.1.1.1 a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 0.63 47.0 3.76e-01 81.5% 56.5%
3974474 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 43.0 3.61e-01 70.4% 51.1%
3952539 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.63 48.0 3.00e-01 81.5% 33.3%
3219795 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.63 48.0 2.95e-01 83.3% 29.1%
3520913 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.62 53.0 3.01e-01 96.3% 40.5%
4240628 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.62 48.0 3.31e-01 92.6% 78.6%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.62 43.0 2.85e-01 74.1% 30.2%
4947850 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.82e-01 83.3% 69.5%
3197266 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.61 41.0 3.76e-01 70.4% 98.6%
3740646 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.60 43.0 3.78e-01 74.1% 56.2%
3292448 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.60 48.0 3.32e-01 92.6% 75.6%
4045825 1166.1.1.1 alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.60 44.0 3.03e-01 77.8% 31.1%
3538243 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.60 43.0 3.77e-01 98.1% 51.2%
3261727 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.60 48.0 3.77e-01 88.9% 68.7%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.60 44.0 3.51e-01 83.3% 95.0%
3937789 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.59 41.0 2.87e-01 72.2% 95.2%
None 0.59 46.0 3.36e-01 92.6% 33.3%
4967633 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 49.0 4.10e-01 88.9% 64.4%
5007853 101.1.2.192 alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.59 50.0 4.57e-01 90.7% 81.2%
4493573 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.58 51.0 3.47e-01 100.0% 54.5%
3487912 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.53e-01 85.2% 55.5%
4008061 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.15e-01 96.3% 64.0%
3273185 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.57 50.0 2.90e-01 100.0% 44.1%
3213954 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.56 49.0 3.43e-01 100.0% 56.3%
4179803 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.56 47.0 3.27e-01 100.0% 52.5%
3392896 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 42.0 3.64e-01 81.5% 55.3%
3984393 101.1.9.88 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.55 43.0 3.44e-01 85.2% 80.0%
4013126 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.55 40.0 3.48e-01 81.5% 76.7%
3598683 109.20.1.0 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain 0.55 45.0 2.94e-01 92.6% 54.7%
4182876 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.54 44.0 3.11e-01 100.0% 53.2%
4977640 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.53 38.0 3.01e-01 79.6% 51.9%
3478227 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.29e-01 70.4% 67.1%
3742496 2006.1.6.19 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1 0.53 43.0 2.81e-01 88.9% 90.8%
4933311 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.52 45.0 3.33e-01 98.1% 92.0%
5073006 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.52 42.0 3.10e-01 92.6% 98.1%
3409172 331.23.1.3 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS11_C 0.51 39.0 3.35e-01 79.6% 91.8%
3834208 2004.5.1.3 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.51 45.0 2.92e-01 96.3% 88.3%
5042330 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.51 40.0 3.76e-01 90.7% 90.0%
4324596 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.51 42.0 3.63e-01 96.3% 60.0%