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PH2015_10_scaffold_0_prodigal-single.1__X__X__00226

Bact-Vir

PH2015_10_scaffold_0_prodigal-single.1__X__X__00226

Identity

Kingdom:
phage

Quality

78.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-86
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 5.43e-01 100.0% 67.5%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.15e-01 100.0% 76.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.68 58.0 5.33e-01 100.0% 81.8%
5ygqA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 56.0 3.67e-01 95.9% 58.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 52.0 5.24e-01 98.0% 91.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 49.0 4.60e-01 83.7% 86.9%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 50.0 4.64e-01 87.8% 81.8%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.07e-01 93.9% 91.5%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.86e-01 98.0% 87.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 55.0 5.21e-01 100.0% 96.7%
4ntcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 54.0 4.09e-01 98.0% 98.4%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.64 44.0 3.48e-01 100.0% 32.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 4.85e-01 100.0% 81.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 4.93e-01 100.0% 86.4%
3we0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 51.0 3.24e-01 95.9% 48.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.04e-01 100.0% 83.9%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 50.0 3.38e-01 95.9% 59.9%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.05e-01 100.0% 81.4%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.62 42.0 4.13e-01 73.5% 66.0%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 50.0 3.02e-01 95.9% 40.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 51.0 4.83e-01 100.0% 87.1%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 50.0 3.49e-01 95.9% 62.6%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.76e-01 100.0% 72.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.74e-01 93.9% 78.0%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.61 46.0 3.19e-01 87.8% 42.3%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 3.83e-01 79.6% 96.2%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 3.95e-01 100.0% 98.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 46.0 4.28e-01 87.8% 76.1%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.27e-01 87.8% 75.8%
3ng7X01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.26e-01 95.9% 63.8%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.34e-01 100.0% 61.2%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 3.48e-01 91.8% 38.2%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 3.64e-01 100.0% 80.8%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 45.0 3.34e-01 83.7% 58.2%
4w8kA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 45.0 3.78e-01 87.8% 76.9%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 47.0 3.75e-01 100.0% 74.8%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 3.77e-01 100.0% 98.3%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 39.0 3.87e-01 73.5% 66.7%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 3.49e-01 89.8% 79.5%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.62e-01 75.5% 53.4%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.17e-01 100.0% 63.8%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 38.0 3.81e-01 73.5% 66.7%
1x4xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.30e-01 100.0% 37.7%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.56 38.0 3.77e-01 73.5% 66.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.41e-01 100.0% 82.3%
1wfuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.45e-01 100.0% 43.2%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 45.0 3.64e-01 100.0% 50.5%
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.55 42.0 2.85e-01 89.8% 78.3%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.25e-01 87.8% 84.1%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 44.0 2.98e-01 98.0% 88.5%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.52 35.0 3.35e-01 71.4% 91.9%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.62e-01 89.8% 43.2%
1yarH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 36.0 2.49e-01 77.6% 96.1%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 40.0 3.63e-01 87.8% 91.7%
2yn3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.54e-01 85.7% 91.5%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.38e-01 100.0% 50.0%
1ep5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.32e-01 87.8% 87.2%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.72 62.0 5.44e-01 100.0% 69.3%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.81e-01 100.0% 86.7%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.71 62.0 5.85e-01 100.0% 81.7%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.71 60.0 5.22e-01 100.0% 75.0%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.08e-01 100.0% 63.9%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 61.0 5.30e-01 100.0% 68.0%
4932492 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.69 45.0 4.28e-01 73.5% 55.0%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.19e-01 93.9% 89.1%
4241924 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.66 56.0 4.69e-01 100.0% 56.7%
3478898 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.13e-01 100.0% 75.4%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.39e-01 100.0% 89.1%
3219127 2003.1.2.130 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_2, NAD_binding_8 0.64 52.0 3.06e-01 95.9% 66.0%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.84e-01 95.9% 81.4%
3291190 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.64 53.0 3.37e-01 95.9% 50.9%
3187470 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.64 52.0 3.31e-01 95.9% 50.9%
5026824 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.88e-01 100.0% 72.9%
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.63 51.0 4.98e-01 98.0% 83.6%
3855038 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.63 53.0 3.73e-01 98.0% 30.0%
4070152 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.62 50.0 3.05e-01 95.9% 39.3%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.62 53.0 4.51e-01 100.0% 57.6%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.62 52.0 4.96e-01 100.0% 81.4%
4341157 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 52.0 3.17e-01 100.0% 32.2%
3782038 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.15e-01 100.0% 47.0%
3990001 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 49.0 4.90e-01 95.9% 98.1%
1833392 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.62 50.0 3.59e-01 95.9% 94.4%
3520661 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 2.84e-01 91.8% 10.1%
3722079 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 50.0 3.03e-01 95.9% 40.3%
2427475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.60e-01 100.0% 70.1%
3173941 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.04e-01 100.0% 47.0%
3343842 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 48.0 2.89e-01 95.9% 39.5%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.63e-01 95.9% 72.3%
5033011 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 3.75e-01 100.0% 44.4%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.61 51.0 4.87e-01 100.0% 83.3%
5049872 56.2.1.0 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.61 49.0 4.52e-01 100.0% 71.4%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.61 50.0 4.47e-01 100.0% 64.0%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.61 51.0 4.86e-01 100.0% 86.7%
5035446 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.60 40.0 3.91e-01 71.4% 61.8%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.46e-01 100.0% 70.7%
3995515 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 48.0 2.99e-01 91.8% 21.4%
3581386 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 48.0 3.92e-01 100.0% 48.9%
4019919 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.59 47.0 3.00e-01 95.9% 59.0%
4032637 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 48.0 4.68e-01 98.0% 94.5%
4013462 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 44.0 2.82e-01 87.8% 16.2%
4933970 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.59 40.0 3.84e-01 71.4% 61.7%
4288670 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.59 48.0 2.94e-01 95.9% 50.3%
4928594 221.1.2.20 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e 0.58 39.0 2.80e-01 73.5% 20.6%
3824346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.22e-01 100.0% 61.3%
2106031 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.58 39.0 3.78e-01 73.5% 59.3%
4480519 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.59e-01 100.0% 81.7%
1949626 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.57 38.0 3.71e-01 73.5% 57.6%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 45.0 4.51e-01 95.9% 100.0%
5045583 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.66e-01 100.0% 47.8%
3599142 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 3.63e-01 73.5% 56.7%
5055397 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.45e-01 100.0% 41.0%
3662052 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.56 37.0 3.20e-01 73.5% 40.0%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.29e-01 100.0% 92.3%
5046680 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.52e-01 100.0% 45.3%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.55 46.0 4.10e-01 100.0% 69.3%
5054988 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.30e-01 83.7% 89.0%
4945637 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.46e-01 100.0% 45.0%
3963647 2.8.1.0 beta barrels › OB-fold › mu transposases-C › mu transposases-C 0.53 41.0 3.67e-01 89.8% 89.3%
3755800 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.52 41.0 3.25e-01 91.8% 41.8%
4999741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.65e-01 100.0% 67.5%
3679125 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 34.0 2.47e-01 73.5% 19.4%
5033164 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.31e-01 100.0% 49.6%