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PH2015_14_scaffold_1_prodigal-single.1__X__X__00007
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00007
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-145
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.67 | 58.0 | 5.04e-01 | 92.9% | 64.5% |
| 2hlyA00 | 3.10.550.10 | Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 | 0.65 | 57.0 | 4.65e-01 | 94.6% | 66.8% |
| 3iutA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 55.0 | 4.36e-01 | 98.2% | 92.1% |
| 3v8uA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.60 | 45.0 | 3.86e-01 | 79.5% | 94.4% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 50.0 | 3.93e-01 | 98.2% | 86.3% |
| 6p3qA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 42.0 | 3.76e-01 | 78.6% | 81.0% |
| 4rr5A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.55 | 31.0 | 4.05e-01 | 77.7% | 100.0% |
| 2nysA00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.54 | 37.0 | 3.72e-01 | 80.4% | 68.4% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.53 | 39.0 | 4.24e-01 | 82.1% | 92.6% |
| 3afgB01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.53 | 29.0 | 3.33e-01 | 73.2% | 70.1% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.52 | 35.0 | 3.49e-01 | 96.4% | 65.0% |
| 1kwmA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.52 | 38.0 | 4.14e-01 | 83.9% | 98.9% |
| 4pcqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 37.0 | 4.12e-01 | 75.9% | 100.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986716 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.69 | 62.0 | 5.31e-01 | 96.4% | 78.2% |
| 5049046 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.68 | 58.0 | 5.23e-01 | 93.8% | 91.6% |
| 4944506 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 55.0 | 4.40e-01 | 93.8% | 59.6% |
| 3465950 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.65 | 54.0 | 4.43e-01 | 88.4% | 76.9% |
| 3250297 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.62 | 57.0 | 4.16e-01 | 99.1% | 77.1% |
| 5034502 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.61 | 55.0 | 4.32e-01 | 97.3% | 89.8% |
| 3495032 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.57 | 45.0 | 3.62e-01 | 83.9% | 100.0% |
| 3213114 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.56 | 43.0 | 4.82e-01 | 91.1% | 100.0% |
| 5016883 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 39.0 | 4.40e-01 | 78.6% | 95.3% |
| 3937776 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.56 | 35.0 | 4.12e-01 | 72.3% | 94.5% |
| 3461259 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 32.0 | 3.98e-01 | 80.4% | 96.9% |
| 3425778 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.55 | 31.0 | 3.62e-01 | 81.2% | 77.5% |
| 3738776 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 39.0 | 3.66e-01 | 75.0% | 87.9% |
| 3626277 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 42.0 | 4.59e-01 | 93.8% | 98.9% |
| 4018393 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.53 | 39.0 | 3.65e-01 | 90.2% | 60.7% |
| 3728936 | 219.1.1.95 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6914 | 0.52 | 39.0 | 3.51e-01 | 78.6% | 86.5% |
| 3993001 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 36.0 | 3.30e-01 | 72.3% | 66.5% |
| 4934291 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.51 | 37.0 | 3.97e-01 | 81.2% | 89.5% |
| 5054020 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 32.0 | 3.45e-01 | 71.4% | 73.7% |
| 3191989 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.51 | 36.0 | 3.39e-01 | 75.0% | 67.6% |
| 5079325 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.51 | 37.0 | 3.95e-01 | 83.0% | 87.0% |
| 4184949 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.51 | 31.0 | 2.78e-01 | 85.7% | 43.2% |
| 5031673 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 35.0 | 3.59e-01 | 74.1% | 74.3% |
| 4426056 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.51 | 38.0 | 3.44e-01 | 92.9% | 57.4% |
| 4956291 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.50 | 37.0 | 4.06e-01 | 81.2% | 96.7% |
| 3705615 | 219.1.1.37 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C97 | 0.50 | 37.0 | 3.39e-01 | 77.7% | 82.6% |
| 3226546 | 1202.1.1.1 ↗ | few secondary structure elements › barrettide A › barrettide A › barrettide A › NRF | 0.50 | 43.0 | 3.80e-01 | 92.0% | 65.0% |
| 4270236 | 5084.1.1.7 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagP | 0.50 | 36.0 | 3.21e-01 | 75.0% | 87.9% |