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PH2015_14_scaffold_1_prodigal-single.1__X__X__00009

Bact-Vir

PH2015_14_scaffold_1_prodigal-single.1__X__X__00009

Identity

Kingdom:
phage

Quality

93.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-55
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f6tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 49.0 3.73e-01 100.0% 40.5%
3g7qA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 48.0 3.26e-01 98.0% 74.1%
5k5iA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 28.0 2.85e-01 98.0% 38.5%
5u89A02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.59 48.0 3.54e-01 100.0% 70.5%
2jiiA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 48.0 3.26e-01 94.1% 41.0%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 3.85e-01 100.0% 91.5%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.57 47.0 3.23e-01 98.0% 69.6%
1t3qB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.57 46.0 3.22e-01 96.1% 70.1%
2g1pA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.57 34.0 2.73e-01 72.5% 30.0%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 46.0 3.90e-01 100.0% 89.1%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 38.0 3.05e-01 74.5% 80.9%
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.54 40.0 3.12e-01 84.3% 94.8%
3zyvC06 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.53 43.0 2.85e-01 98.0% 56.0%
2wtkC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 42.0 2.98e-01 98.0% 42.3%
2wtvA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 45.0 3.20e-01 100.0% 39.4%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 39.0 3.60e-01 100.0% 62.7%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.48e-01 98.0% 55.2%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.51 45.0 3.59e-01 100.0% 86.4%
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 40.0 3.03e-01 100.0% 98.8%
3uqcD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 44.0 3.19e-01 100.0% 49.7%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 40.0 2.98e-01 98.0% 38.4%
4z24A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.61e-01 100.0% 91.0%
2vh2A02 3.40.50.11690 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cell division protein FtsQ/DivIB 0.50 39.0 3.04e-01 92.2% 38.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1874629 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.64 51.0 3.12e-01 100.0% 13.0%
5061165 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.63 50.0 3.07e-01 100.0% 13.9%
5009438 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.61 48.0 2.76e-01 100.0% 7.9%
4337886 231.1.1.3 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 0.61 50.0 2.86e-01 100.0% 9.2%
5041848 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.61 48.0 4.66e-01 94.1% 81.7%
5010104 231.1.2.5 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › MoCoBD_1 0.60 43.0 2.50e-01 98.0% 7.2%
4998439 187.1.1.4 alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_17 0.60 45.0 3.23e-01 84.3% 55.6%
5061220 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.59 50.0 3.06e-01 98.0% 82.9%
5073756 304.139.1.3 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 0.59 50.0 3.10e-01 100.0% 53.4%
4946546 304.139.1.3 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 0.59 50.0 3.17e-01 100.0% 47.5%
1874079 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.59 48.0 2.95e-01 100.0% 15.2%
3704770 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.59 45.0 3.46e-01 100.0% 34.6%
2813938 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.56 46.0 2.86e-01 100.0% 14.6%
1873838 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.56 45.0 2.76e-01 98.0% 12.8%
3739578 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 42.0 3.76e-01 92.2% 80.0%
3742672 4958.1.1.0 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.52 42.0 3.44e-01 94.1% 47.0%
1875525 231.1.1.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.52 42.0 2.62e-01 100.0% 14.0%
3379375 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.52 44.0 3.03e-01 100.0% 36.3%
5826 330.5.1.2 a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein › Phage_ABA_S 0.51 45.0 3.59e-01 100.0% 86.4%
136932 235.1.1.6 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.51 40.0 2.99e-01 98.0% 38.2%
3168355 2485.1.1.17 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 0.51 34.0 2.59e-01 70.6% 85.4%
3394102 3343.1.1.3 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_N_terminal 0.51 39.0 2.25e-01 90.2% 25.3%
3170014 130.1.2.2 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › PF31075 0.51 38.0 2.55e-01 86.3% 20.2%
5009982 231.1.2.5 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › MoCoBD_1 0.51 40.0 2.34e-01 98.0% 44.1%
4210079 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.30e-01 86.3% 55.3%
D2 high residues 56-175
PDB
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.92 49.0 6.26e-01 100.0% 85.5%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.88 53.0 6.41e-01 100.0% 89.0%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.85 35.0 5.56e-01 100.0% 100.0%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.83 35.0 5.20e-01 100.0% 89.1%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.81 63.0 5.87e-01 100.0% 67.1%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.80 63.0 5.64e-01 100.0% 61.3%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 48.0 5.05e-01 97.5% 67.6%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.75 40.0 3.89e-01 85.8% 47.4%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.72 38.0 4.69e-01 100.0% 83.3%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 43.0 5.00e-01 99.2% 82.8%
2uxwA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 49.0 4.78e-01 100.0% 66.9%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.68 41.0 4.29e-01 82.5% 65.4%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 45.0 4.54e-01 85.0% 68.3%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 43.0 4.36e-01 82.5% 65.8%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 39.0 4.14e-01 80.0% 66.0%
7y9hB01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 44.0 3.23e-01 76.7% 26.1%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 56.0 5.20e-01 100.0% 74.3%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 30.0 3.60e-01 77.5% 62.7%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.65 41.0 4.65e-01 100.0% 85.1%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 60.0 4.47e-01 100.0% 71.4%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.64 38.0 3.79e-01 79.2% 54.7%
3zdqA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.64 45.0 3.28e-01 85.8% 26.1%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 50.0 3.94e-01 86.7% 41.4%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 58.0 4.46e-01 100.0% 80.2%
3ofnY00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.63 50.0 5.09e-01 85.8% 87.0%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 58.0 4.86e-01 100.0% 82.1%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 37.0 3.99e-01 85.0% 67.6%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.62 36.0 3.61e-01 78.3% 53.1%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 35.0 4.15e-01 100.0% 81.2%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.62 29.0 3.43e-01 78.3% 61.2%
3s0xA01 1.20.120.1220 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 35.0 3.33e-01 96.7% 44.9%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 55.0 4.27e-01 95.0% 73.1%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 57.0 4.40e-01 100.0% 77.5%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 41.0 4.44e-01 75.8% 79.4%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.61 44.0 4.55e-01 80.8% 79.5%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.61 47.0 4.31e-01 80.0% 83.7%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 56.0 4.65e-01 100.0% 79.9%
3qweA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 55.0 4.31e-01 100.0% 77.7%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.61 55.0 4.04e-01 100.0% 69.2%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.61 37.0 4.48e-01 83.3% 96.1%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 41.0 4.32e-01 95.8% 76.1%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 51.0 4.21e-01 90.0% 78.9%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 55.0 4.22e-01 100.0% 72.7%
4kk2B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 41.0 2.95e-01 100.0% 24.4%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.60 50.0 4.15e-01 86.7% 81.1%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.60 49.0 4.45e-01 86.7% 66.5%
3wmeA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.60 46.0 3.35e-01 85.0% 30.1%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 49.0 4.41e-01 85.8% 86.2%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 48.0 4.21e-01 85.0% 60.1%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 54.0 4.26e-01 100.0% 77.1%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.59 48.0 3.97e-01 86.7% 51.6%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.59 48.0 3.52e-01 86.7% 33.3%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 47.0 4.51e-01 85.8% 72.7%
3ajwA00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 48.0 4.64e-01 85.8% 83.6%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 52.0 4.26e-01 95.0% 72.4%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 53.0 4.62e-01 100.0% 82.9%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.58 53.0 3.84e-01 100.0% 57.2%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 47.0 4.28e-01 85.8% 83.2%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 42.0 3.90e-01 100.0% 60.5%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 51.0 4.15e-01 100.0% 79.2%
3ok8A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 51.0 4.23e-01 100.0% 80.4%
4xvxA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.57 32.0 3.31e-01 99.2% 56.8%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.55 44.0 3.84e-01 85.0% 89.6%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 44.0 4.71e-01 85.8% 99.1%
1nu7D01 1.20.120.750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 0.53 43.0 4.19e-01 100.0% 77.0%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 43.0 4.34e-01 89.2% 84.7%
6k9pB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.51 36.0 3.31e-01 88.3% 55.9%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 37.0 2.58e-01 75.0% 55.1%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 45.0 3.80e-01 95.0% 72.9%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4523046 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.77 51.0 4.89e-01 83.3% 60.0%
4945888 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.73 48.0 5.83e-01 78.3% 100.0%
3971026 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.72 51.0 5.07e-01 86.7% 69.6%
3972084 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.70 52.0 5.17e-01 86.7% 73.6%
4966374 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 47.0 4.16e-01 85.0% 48.6%
3906810 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.69 49.0 4.69e-01 85.8% 63.6%
3699451 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 51.0 5.28e-01 86.7% 83.5%
3972236 3755.3.1.42 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CheZ 0.67 54.0 4.69e-01 85.0% 92.2%
3875941 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.67 52.0 4.72e-01 99.2% 60.6%
3212004 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.66 45.0 4.04e-01 83.3% 48.8%
3227678 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.65 43.0 4.64e-01 100.0% 80.0%
3241365 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 50.0 4.53e-01 85.8% 60.6%
3913276 3755.3.1.123 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin 0.65 60.0 4.86e-01 100.0% 70.9%
3270478 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.65 33.0 3.51e-01 84.2% 55.2%
3270091 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.65 60.0 4.97e-01 100.0% 83.9%
3456475 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.64 49.0 3.57e-01 86.7% 30.6%
3746563 3755.3.1.123 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin 0.64 59.0 5.49e-01 100.0% 80.0%
3620913 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.64 57.0 4.80e-01 100.0% 58.5%
3550685 4177.1.1.38 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Tektin 0.64 59.0 5.13e-01 100.0% 74.9%
3694833 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 48.0 4.70e-01 86.7% 73.1%
4030224 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.63 50.0 4.80e-01 100.0% 74.1%
3201057 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.63 57.0 4.86e-01 100.0% 62.7%
3494796 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.63 58.0 4.42e-01 100.0% 75.2%
3493417 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.63 46.0 4.15e-01 85.8% 56.2%
4276314 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 48.0 3.92e-01 86.7% 43.6%
3793986 604.7.1.7 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › Mitofilin 0.63 49.0 4.72e-01 85.8% 72.6%
3251434 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 57.0 5.01e-01 100.0% 97.2%
4569106 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 49.0 3.27e-01 86.7% 21.1%
4468389 5086.1.1.101 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5 0.62 50.0 5.03e-01 85.8% 85.0%
3915989 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.62 50.0 3.01e-01 85.8% 55.5%
5001019 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.62 57.0 5.05e-01 100.0% 77.1%
3182561 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 51.0 4.53e-01 86.7% 73.3%
3415295 4177.1.1.38 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Tektin 0.62 56.0 5.20e-01 98.3% 78.7%
3224284 603.3.1.0 alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein 0.61 56.0 4.95e-01 100.0% 68.6%
3706526 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 50.0 4.62e-01 85.8% 71.3%
3274792 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.61 56.0 4.80e-01 100.0% 83.2%
3881428 3835.1.1.1 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › PLC-beta_C 0.61 51.0 4.29e-01 86.7% 57.9%
4149566 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 50.0 3.85e-01 85.8% 87.6%
3488631 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.61 53.0 4.01e-01 93.3% 75.3%
4410114 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 49.0 3.84e-01 86.7% 92.9%
4028552 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 49.0 3.83e-01 85.8% 59.2%
3170172 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.60 55.0 4.30e-01 100.0% 72.0%
4392204 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 49.0 3.96e-01 85.8% 78.2%
3794996 192.12.1.0 alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM 0.60 55.0 5.09e-01 99.2% 100.0%
3867942 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.60 49.0 3.88e-01 85.8% 76.6%
3592972 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 49.0 4.11e-01 85.8% 67.7%
3543713 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.64e-01 85.0% 94.4%
4337633 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 48.0 3.61e-01 86.7% 97.7%
4932707 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 48.0 4.80e-01 85.8% 82.4%
3911997 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.60 54.0 4.20e-01 100.0% 69.4%
4016292 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.60 49.0 4.73e-01 86.7% 90.4%
3509997 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.60 54.0 4.52e-01 100.0% 92.2%
3712647 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 48.0 3.48e-01 86.7% 31.9%
3889810 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.59 54.0 4.32e-01 100.0% 85.1%
4414655 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 48.0 4.22e-01 86.7% 81.7%
3936021 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.59 48.0 3.97e-01 85.8% 51.4%
4281985 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 47.0 4.50e-01 85.8% 72.1%
4583258 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 48.0 3.26e-01 86.7% 25.3%
3812652 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 46.0 3.93e-01 85.8% 50.8%
3579324 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 48.0 4.38e-01 100.0% 65.6%
3949633 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 48.0 4.03e-01 86.7% 56.5%
3571433 3939.1.1.220 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › KIF21A 0.59 48.0 4.35e-01 86.7% 66.3%
3165834 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 48.0 3.70e-01 86.7% 92.7%
3890086 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 47.0 4.24e-01 85.8% 64.2%
3235363 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.58 47.0 3.83e-01 85.8% 67.7%
3933812 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 52.0 4.26e-01 97.5% 86.0%
3965792 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.58 47.0 3.59e-01 86.7% 38.2%
3691415 2004.1.1.748 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_23, SbcC_Walker_B 0.58 48.0 3.12e-01 90.0% 53.0%
4371230 2004.1.1.615 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.57 50.0 3.04e-01 93.3% 37.8%
3480861 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.57 52.0 4.08e-01 100.0% 82.7%
3989648 1203.1.2.17 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ABC_membrane 0.57 47.0 3.92e-01 86.7% 53.0%
4995732 604.32.1.0 alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.57 47.0 4.49e-01 88.3% 77.1%
3662731 1075.4.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.57 46.0 3.70e-01 86.7% 45.1%
2617308 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.57 46.0 3.22e-01 86.7% 28.1%
4144790 3755.3.1.592 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30340 0.56 47.0 3.28e-01 90.0% 68.3%
3911469 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.54 48.0 4.46e-01 97.5% 94.8%