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PH2015_14_scaffold_1_prodigal-single.1__X__X__00010

Bact-Vir

PH2015_14_scaffold_1_prodigal-single.1__X__X__00010

Identity

Kingdom:
phage

Quality

95.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-58
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.85 73.0 7.33e-01 100.0% 92.2%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.82 66.0 6.38e-01 92.0% 80.0%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.65 52.0 3.52e-01 92.0% 52.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 53.0 4.27e-01 98.0% 60.2%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 49.0 4.13e-01 88.0% 90.0%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 51.0 3.09e-01 98.0% 31.1%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.60 48.0 4.03e-01 92.0% 54.3%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 40.0 3.36e-01 72.0% 88.9%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 2.79e-01 100.0% 94.6%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 39.0 3.64e-01 70.0% 83.1%
3h37A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 42.0 3.20e-01 88.0% 91.7%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 39.0 3.49e-01 70.0% 84.9%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.84e-01 96.0% 32.5%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 41.0 3.48e-01 80.0% 60.9%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 41.0 2.63e-01 88.0% 34.0%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 39.0 3.38e-01 80.0% 61.6%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 39.0 2.48e-01 82.0% 91.0%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.54 39.0 4.04e-01 86.0% 100.0%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.66e-01 92.0% 25.6%
4jlxA02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.53 39.0 2.77e-01 80.0% 63.1%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 37.0 3.31e-01 76.0% 83.8%
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.51 37.0 3.30e-01 82.0% 56.6%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.51 39.0 2.79e-01 90.0% 50.5%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.51 40.0 3.39e-01 96.0% 63.9%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 38.0 3.72e-01 98.0% 78.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.50 38.0 2.39e-01 92.0% 28.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3900165 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.85 66.0 7.08e-01 88.0% 97.7%
3498702 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.80 63.0 6.59e-01 88.0% 100.0%
3755669 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.71 47.0 5.04e-01 78.0% 85.0%
5002640 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.70 54.0 5.47e-01 88.0% 90.0%
3532309 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.69 46.0 4.41e-01 78.0% 58.3%
4539369 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.69 47.0 4.64e-01 84.0% 65.5%
3935301 391.1.2.11 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.68 46.0 4.55e-01 78.0% 65.5%
3852171 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.67 44.0 4.80e-01 76.0% 85.0%
3538117 391.1.2.17 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC, VWC2L_2nd 0.64 47.0 3.54e-01 80.0% 31.2%
3930915 3105.1.1.4 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.63 50.0 3.52e-01 90.0% 37.6%
1969 12.1.1.16 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Cyc-maltodext_C 0.61 45.0 3.88e-01 82.0% 59.0%
3938632 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.60 49.0 3.99e-01 96.0% 55.0%
4029125 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.59 50.0 3.01e-01 100.0% 86.8%
5062536 5.1.4.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Glu_cyclase_2 0.57 45.0 3.01e-01 92.0% 90.8%
1870465 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.57 39.0 3.04e-01 72.0% 92.3%
3721847 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.57 45.0 2.62e-01 94.0% 18.6%
3918436 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 46.0 2.81e-01 96.0% 79.2%
4048173 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.56 46.0 3.65e-01 100.0% 54.2%
4029614 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 44.0 2.62e-01 90.0% 18.1%
3263735 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 39.0 2.42e-01 78.0% 15.4%
3561744 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 45.0 2.79e-01 100.0% 96.0%
3264116 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.55 46.0 2.85e-01 100.0% 21.1%
3926070 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.77e-01 98.0% 80.6%
5067909 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 38.0 3.31e-01 72.0% 65.9%
None 0.54 46.0 2.83e-01 100.0% 86.8%
3582085 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.54 42.0 2.84e-01 92.0% 28.7%
3510576 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.54 39.0 3.45e-01 80.0% 70.0%
3782154 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.54 42.0 2.61e-01 92.0% 21.6%
3512181 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.86e-01 100.0% 49.5%
3233720 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 43.0 2.73e-01 96.0% 36.5%
3506771 5.1.5.75 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.53 41.0 2.58e-01 92.0% 95.8%
4053332 5.1.4.370 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WDR55 0.53 44.0 2.70e-01 100.0% 40.0%
3233789 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 41.0 2.54e-01 92.0% 21.8%
3580035 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 2.70e-01 100.0% 86.6%
3739527 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.52e-01 92.0% 31.6%
3272644 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 42.0 2.38e-01 92.0% 9.2%
3994170 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.98e-01 98.0% 29.6%
3609747 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 43.0 2.74e-01 98.0% 34.9%
3672926 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.70e-01 90.0% 35.6%
4998686 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 41.0 3.06e-01 94.0% 68.0%
4423636 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.61e-01 98.0% 90.7%
4436120 2002.1.1.121 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.52 40.0 2.42e-01 84.0% 46.7%
3720248 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 42.0 2.43e-01 98.0% 16.9%
3366119 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 42.0 2.80e-01 92.0% 36.0%
4029773 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 42.0 2.59e-01 98.0% 94.5%
3406958 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 41.0 2.64e-01 96.0% 33.9%
3223455 5.1.5.114 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NWD2_C 0.51 40.0 2.48e-01 100.0% 84.2%
D2 high residues 109-157
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 42.0 3.07e-01 77.6% 35.5%
6n8eA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.55 39.0 2.56e-01 77.6% 61.2%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.57e-01 85.7% 72.4%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 39.0 3.06e-01 89.8% 67.9%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.52 39.0 3.07e-01 100.0% 36.6%
6jmgB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 34.0 2.47e-01 71.4% 85.5%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 42.0 3.20e-01 100.0% 74.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222229 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 45.0 3.05e-01 75.5% 94.1%
4856563 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.63 44.0 4.65e-01 73.5% 95.0%
3744883 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 50.0 3.71e-01 100.0% 74.5%
5036655 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 3.75e-01 71.4% 61.7%
4836809 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.58 46.0 3.19e-01 91.8% 33.0%
1851179 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.57 47.0 4.27e-01 100.0% 67.1%
1094905 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 39.0 3.49e-01 73.5% 62.9%
3475247 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.56 49.0 4.39e-01 100.0% 70.0%
5047013 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 3.81e-01 73.5% 74.5%
3496211 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 47.0 4.23e-01 98.0% 68.6%
4002697 5090.2.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain 0.55 47.0 3.30e-01 100.0% 56.3%
5065208 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 3.59e-01 71.4% 67.3%
3605879 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.54 35.0 3.68e-01 91.8% 73.3%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 45.0 4.44e-01 100.0% 96.4%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.29e-01 85.7% 54.7%
4946341 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.51 35.0 2.27e-01 75.5% 14.3%
3757760 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.51 35.0 2.32e-01 71.4% 33.9%
3682832 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 43.0 3.10e-01 100.0% 45.8%
3307036 375.1.1.69 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.50 34.0 3.45e-01 71.4% 76.0%
4858751 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 36.0 2.88e-01 85.7% 97.7%
4302456 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.50 37.0 3.11e-01 100.0% 44.4%
D3 high residues 166-394
PDB