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PH2015_14_scaffold_1_prodigal-single.1__X__X__00022
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00022
Identity
- Kingdom:
- phage
Quality
73.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-70
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gm8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 44.0 | 4.20e-01 | 98.5% | 55.1% |
| 1vwxB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 45.0 | 3.35e-01 | 82.4% | 65.6% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 43.0 | 3.74e-01 | 100.0% | 50.5% |
| 2dp9A01 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.57 | 49.0 | 4.31e-01 | 95.6% | 75.0% |
| 6t85A01 | 3.90.700.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | 0.56 | 49.0 | 3.85e-01 | 100.0% | 95.3% |
| 5o60I00 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.56 | 48.0 | 3.97e-01 | 98.5% | 54.0% |
| 2htiA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 42.0 | 3.54e-01 | 100.0% | 46.0% |
| 3bh7B02 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.55 | 46.0 | 3.95e-01 | 100.0% | 61.2% |
| 1ow1A00 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.52 | 46.0 | 3.45e-01 | 98.5% | 55.7% |
| 3ec6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 39.0 | 3.35e-01 | 100.0% | 46.1% |
| 1zavA01 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.52 | 43.0 | 3.54e-01 | 97.1% | 54.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3931181 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.66 | 57.0 | 5.01e-01 | 100.0% | 71.4% |
| 4165814 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.64 | 55.0 | 4.62e-01 | 100.0% | 85.8% |
| 3931094 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 53.0 | 4.66e-01 | 98.5% | 70.5% |
| 3183621 | 2003.1.2.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 | 0.62 | 52.0 | 3.21e-01 | 100.0% | 24.3% |
| 3181235 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.61 | 52.0 | 3.20e-01 | 100.0% | 24.0% |
| 4495621 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.61 | 50.0 | 4.12e-01 | 94.1% | 81.5% |
| 3331045 | 223.1.1.60 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CCB2_CCB4 | 0.61 | 48.0 | 3.79e-01 | 88.2% | 82.7% |
| 4940958 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.60 | 43.0 | 3.84e-01 | 100.0% | 53.7% |
| 4013458 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 42.0 | 3.59e-01 | 100.0% | 43.3% |
| 4500382 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.59 | 45.0 | 4.81e-01 | 100.0% | 93.2% |
| 4983107 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.56 | 49.0 | 3.62e-01 | 98.5% | 38.9% |
| 4975645 | 304.60.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 | 0.56 | 49.0 | 3.92e-01 | 98.5% | 54.1% |
| 5018578 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.56 | 44.0 | 3.64e-01 | 100.0% | 46.9% |
| 4300924 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 41.0 | 3.56e-01 | 100.0% | 48.7% |
| 4942493 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 38.0 | 3.15e-01 | 97.1% | 39.2% |
| 3953729 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 43.0 | 3.66e-01 | 88.2% | 84.2% |
| 4004598 | 223.8.1.3 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES4 | 0.55 | 40.0 | 3.09e-01 | 98.5% | 34.2% |
| 3950224 | 304.60.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10, PF27436 | 0.55 | 47.0 | 3.55e-01 | 98.5% | 63.4% |
| 5023730 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.55 | 46.0 | 3.72e-01 | 98.5% | 58.6% |
| 3258862 | 206.1.1.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Act-Frag_cataly | 0.54 | 46.0 | 3.06e-01 | 100.0% | 37.2% |
| 4964887 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 42.0 | 3.56e-01 | 100.0% | 50.0% |
| 4504655 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.53 | 45.0 | 2.88e-01 | 100.0% | 23.7% |
| 3394620 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 3.32e-01 | 83.8% | 70.8% |
| 3958190 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 45.0 | 3.60e-01 | 98.5% | 60.7% |
| 3957039 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.52 | 45.0 | 3.99e-01 | 100.0% | 74.0% |
| 3250505 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.51 | 44.0 | 3.51e-01 | 100.0% | 95.2% |
| 4298813 | 327.6.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin | 0.51 | 45.0 | 3.08e-01 | 100.0% | 99.2% |