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PH2015_14_scaffold_1_prodigal-single.1__X__X__00033

Bact-Vir

PH2015_14_scaffold_1_prodigal-single.1__X__X__00033

Identity

Kingdom:
phage

Quality

95.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-12_67-196
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08282.19 best Hydrolase_3 21.3 2.80e-04 65.2% 16.9%
CATH (86)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qyiA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.79 73.0 6.59e-01 97.9% 97.8%
4ex6A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.78 72.0 7.03e-01 97.2% 97.4%
4uavA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.78 73.0 6.94e-01 99.3% 94.4%
2fi1A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.78 63.0 6.71e-01 96.5% 96.7%
3kbbA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.78 70.0 7.01e-01 96.5% 99.3%
1te2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.77 71.0 7.08e-01 97.9% 97.3%
2hoqA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.77 72.0 6.90e-01 100.0% 94.9%
3e58B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.77 70.0 6.90e-01 96.5% 96.6%
1z5gA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.77 65.0 5.64e-01 89.4% 82.7%
2cftA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.77 68.0 6.40e-01 95.0% 88.2%
6f2xA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 69.0 6.75e-01 96.5% 96.7%
2ah5A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 68.0 6.80e-01 95.0% 97.2%
4g9bA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 70.0 6.92e-01 100.0% 93.9%
3ed5A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 69.0 6.83e-01 96.5% 95.2%
2nyvA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.75 70.0 6.85e-01 99.3% 97.4%
1wviA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.75 67.0 6.64e-01 94.3% 97.9%
1s2oA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.75 69.0 6.43e-01 99.3% 97.7%
2w43A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.74 67.0 6.73e-01 97.2% 98.6%
4uw9A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.74 68.0 6.83e-01 100.0% 98.6%
3kzxA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.74 67.0 6.77e-01 100.0% 99.3%
2odaA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.73 67.0 6.04e-01 100.0% 96.4%
1cqzB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.73 65.0 6.68e-01 96.5% 99.3%
2ybdA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.72 65.0 6.48e-01 97.2% 95.8%
5djsA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.72 66.0 6.23e-01 100.0% 89.3%
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.71 67.0 6.40e-01 100.0% 96.9%
6lfnA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.71 65.0 5.25e-01 98.6% 100.0%
4i9fB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.71 64.0 6.31e-01 97.2% 93.9%
7mi0A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.71 66.0 5.94e-01 100.0% 78.0%
7va8A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.70 63.0 5.11e-01 97.9% 100.0%
1yb1B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 62.0 5.22e-01 95.7% 91.1%
5jc8C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 64.0 5.25e-01 100.0% 90.5%
6oz7B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 63.0 5.27e-01 97.9% 91.1%
3pvzB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 62.0 4.78e-01 95.7% 67.0%
4x7rA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.69 64.0 5.99e-01 100.0% 84.6%
3olqA00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 53.0 4.09e-01 80.9% 49.7%
5u4qB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 61.0 4.70e-01 95.7% 72.0%
2jjmA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.68 63.0 5.78e-01 100.0% 78.8%
5bt9D00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 61.0 5.05e-01 98.6% 88.1%
3ragB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.66 61.0 5.19e-01 100.0% 95.1%
1kjnA00 3.40.50.10160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like 0.66 59.0 5.75e-01 96.5% 98.7%
2b5xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.66 52.0 5.15e-01 100.0% 79.1%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 53.0 5.59e-01 88.7% 93.8%
1pswA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.66 58.0 5.81e-01 95.0% 95.1%
1ej2A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 53.0 5.06e-01 89.4% 73.1%
6h21A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.66 47.0 4.15e-01 100.0% 51.0%
3s6gY01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.65 58.0 4.70e-01 95.7% 87.0%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.65 53.0 5.06e-01 87.2% 90.2%
2h4aA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 53.0 5.32e-01 86.5% 92.9%
1xhbA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.64 48.0 4.02e-01 100.0% 44.9%
5tz8A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.64 47.0 3.97e-01 100.0% 45.9%
1h3fA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 53.0 4.73e-01 87.9% 84.1%
2bo4A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.63 50.0 4.50e-01 100.0% 61.5%
2rbgA00 3.40.50.11100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 51.0 5.39e-01 87.2% 97.6%
4eygA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 52.0 4.89e-01 87.9% 86.3%
3erwF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 46.0 4.81e-01 97.2% 83.2%
3mt0A00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 57.0 4.49e-01 98.6% 91.5%
6xl1A01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.62 53.0 5.21e-01 98.6% 85.2%
4rk0A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 52.0 5.39e-01 92.9% 100.0%
2d4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 50.0 5.07e-01 87.2% 100.0%
2xgjB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 48.0 4.25e-01 83.0% 71.8%
3k96A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 55.0 5.00e-01 97.9% 86.1%
7d73E01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 51.0 4.38e-01 100.0% 57.6%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 49.0 4.84e-01 86.5% 91.2%
6r8gA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 50.0 4.99e-01 87.9% 99.3%
7d73A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 51.0 4.34e-01 100.0% 55.8%
1vjtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 4.97e-01 97.9% 97.4%
2vdvE01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 53.0 4.78e-01 97.9% 90.2%
3c4aA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 52.0 4.56e-01 100.0% 71.8%
1yh0A02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.58 51.0 4.76e-01 95.0% 87.7%
4u63A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 48.0 4.49e-01 91.5% 73.0%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 51.0 4.37e-01 97.9% 86.3%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.57 50.0 4.46e-01 95.0% 88.8%
3o83A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.56 47.0 3.38e-01 90.8% 56.1%
4amuA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.56 48.0 4.55e-01 92.9% 96.4%
1geqB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 49.0 4.09e-01 97.9% 97.1%
4evwA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 49.0 4.09e-01 97.9% 89.7%
7zllA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 46.0 3.78e-01 93.6% 86.1%
4d02A02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 48.0 4.81e-01 97.9% 99.3%
2ohhA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 48.0 4.78e-01 97.9% 100.0%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.53 37.0 4.23e-01 95.0% 99.0%
4mixA00 3.90.550.20 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.52 46.0 3.69e-01 95.7% 87.0%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 40.0 3.46e-01 80.9% 89.1%
7pd2B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 46.0 3.50e-01 100.0% 78.4%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 40.0 3.43e-01 82.3% 90.9%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 46.0 4.47e-01 100.0% 92.4%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.50 36.0 3.44e-01 73.8% 78.0%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078018 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.79 73.0 6.03e-01 97.2% 98.3%
5039906 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.79 74.0 6.44e-01 97.9% 92.0%
3307688 2006.1.1.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.79 61.0 5.08e-01 80.1% 63.5%
5079773 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.78 72.0 6.14e-01 99.3% 98.2%
5073536 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.77 72.0 6.05e-01 99.3% 95.5%
5014028 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.77 72.0 6.00e-01 100.0% 95.7%
3590730 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.77 71.0 6.15e-01 99.3% 98.6%
4934163 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.77 71.0 6.39e-01 98.6% 97.9%
4945170 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.76 70.0 6.05e-01 97.9% 98.6%
3471971 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.76 54.0 6.20e-01 81.6% 97.1%
3516224 7512.1.1.53 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › ALG11_N 0.75 68.0 5.43e-01 98.6% 89.8%
4956037 2006.1.1.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.75 63.0 5.99e-01 87.9% 98.1%
4964205 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.74 68.0 5.68e-01 97.2% 93.9%
3386095 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.74 67.0 5.86e-01 96.5% 99.0%
4942924 7512.1.1.16 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth 0.73 65.0 6.09e-01 99.3% 78.8%
4009620 7512.1.1.13 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PS_pyruv_trans 0.73 67.0 5.74e-01 100.0% 72.7%
3472056 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.72 68.0 6.41e-01 100.0% 92.9%
4399680 7512.1.1.33 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 0.72 66.0 4.69e-01 100.0% 36.4%
1698349 7512.1.1.33 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 0.72 66.0 5.75e-01 100.0% 71.4%
2987976 7512.1.1.33 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 0.71 65.0 5.67e-01 100.0% 70.9%
135830 2006.1.1.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.71 66.0 6.14e-01 99.3% 91.2%
4829357 3315.1.1.1 a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 0.71 65.0 5.65e-01 100.0% 71.2%
None 0.71 64.0 5.09e-01 97.9% 86.2%
4268086 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.71 48.0 4.76e-01 87.9% 65.3%
5060340 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.70 63.0 4.77e-01 95.7% 74.0%
3971223 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.70 65.0 5.18e-01 100.0% 63.7%
4451024 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.70 61.0 5.65e-01 94.3% 98.9%
4977828 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.69 64.0 5.82e-01 100.0% 81.6%
5029130 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.68 62.0 5.74e-01 100.0% 81.1%
4963305 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.67 54.0 5.54e-01 88.7% 88.0%
3372663 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.67 57.0 5.89e-01 90.8% 97.0%
4444553 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.67 50.0 3.78e-01 100.0% 33.5%
5027405 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.67 49.0 3.52e-01 100.0% 26.7%
3987693 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.66 60.0 5.29e-01 100.0% 68.3%
3461803 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.66 61.0 4.98e-01 100.0% 65.6%
384421 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.66 53.0 5.52e-01 88.7% 91.0%
3971834 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.65 60.0 5.29e-01 100.0% 70.2%
3963662 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.65 57.0 5.56e-01 94.3% 99.4%
4377407 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.65 56.0 5.74e-01 100.0% 96.3%
4566278 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.65 60.0 5.03e-01 100.0% 69.4%
4990263 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.65 52.0 5.40e-01 86.5% 90.3%
None 0.65 48.0 3.98e-01 100.0% 42.7%
3958217 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.64 53.0 4.98e-01 88.7% 88.8%
4963584 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.64 51.0 5.01e-01 88.7% 77.3%
4954406 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.64 47.0 3.57e-01 100.0% 31.8%
4954357 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.64 47.0 3.58e-01 100.0% 32.2%
4948361 2005.1.1.8 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Arginosuc_synth 0.64 50.0 5.28e-01 87.9% 92.8%
4344976 7516.1.1.26 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.64 51.0 3.54e-01 83.7% 54.9%
3385824 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.64 49.0 5.29e-01 88.7% 95.0%
3163893 7512.1.1.23 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_52 0.64 54.0 5.00e-01 90.8% 98.9%
3916493 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.64 48.0 3.40e-01 100.0% 25.8%
4971715 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.64 51.0 5.33e-01 88.7% 93.1%
5010573 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 52.0 5.30e-01 87.2% 90.4%
4944109 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.63 51.0 5.36e-01 87.2% 96.0%
3576298 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.63 48.0 4.07e-01 100.0% 48.1%
4957472 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.63 48.0 3.69e-01 100.0% 34.8%
3652674 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.63 58.0 5.33e-01 100.0% 98.3%
3783636 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.62 57.0 4.46e-01 100.0% 62.3%
2717225 7592.1.1.8 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 0.62 54.0 5.16e-01 98.6% 82.5%
4027084 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.61 53.0 4.90e-01 95.0% 100.0%
3970680 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.61 50.0 5.27e-01 87.9% 98.4%
3411566 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.61 47.0 3.35e-01 82.3% 53.3%
4954061 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.61 47.0 3.62e-01 82.3% 65.8%
4587002 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.60 47.0 4.22e-01 83.7% 77.6%
3274951 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.60 52.0 4.54e-01 93.6% 94.3%
4988574 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 49.0 5.19e-01 90.8% 99.2%
4932719 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.60 47.0 3.41e-01 83.7% 53.4%
4563723 2004.1.1.491 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, RsgA_GTPase 0.59 50.0 4.26e-01 92.2% 64.3%
4138362 2004.1.1.491 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, RsgA_GTPase 0.59 50.0 4.19e-01 92.2% 53.8%
3577853 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.59 53.0 4.51e-01 100.0% 80.9%
387613 2003.1.14.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace 0.59 50.0 4.70e-01 92.2% 85.8%
3936883 7534.1.1.0 a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase 0.58 52.0 4.83e-01 100.0% 92.9%
4936016 7516.1.1.26 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.58 48.0 3.54e-01 89.4% 93.5%
4664987 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 49.0 4.10e-01 92.2% 60.8%
5051943 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.58 51.0 4.29e-01 97.2% 81.2%
5048095 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 51.0 4.29e-01 100.0% 95.7%
4371960 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.54 48.0 3.98e-01 97.2% 93.3%
3590567 2002.1.1.50 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.54 49.0 3.88e-01 99.3% 91.2%
5079820 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.54 48.0 4.01e-01 100.0% 96.0%
3839226 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.54 48.0 4.14e-01 100.0% 83.1%
5034260 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 48.0 3.67e-01 100.0% 77.9%
None 0.52 47.0 3.90e-01 100.0% 95.7%
5062539 7542.1.2.3 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › AcnX_2nd 0.52 35.0 3.98e-01 88.7% 96.0%
2066961 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.51 37.0 3.92e-01 74.5% 100.0%
3600431 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 46.0 4.01e-01 100.0% 84.2%
D2 high residues 14-65
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.46e-01 80.8% 84.1%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 50.0 4.09e-01 80.8% 97.9%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.56e-01 78.8% 76.7%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.30e-01 84.6% 83.7%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.13e-01 84.6% 79.1%
3cdlA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 43.0 4.27e-01 76.9% 88.9%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.20e-01 84.6% 90.3%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.30e-01 84.6% 68.7%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.40e-01 82.7% 80.3%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 3.39e-01 82.7% 40.2%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.88e-01 86.5% 55.1%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 41.0 3.69e-01 73.1% 69.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.25e-01 82.7% 81.0%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.11e-01 80.8% 70.3%
3m8jA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 49.0 4.10e-01 96.2% 74.4%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 40.0 3.04e-01 76.9% 78.3%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.60e-01 86.5% 96.0%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.22e-01 84.6% 78.7%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.47e-01 82.7% 87.8%
3a8rA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 44.0 3.47e-01 90.4% 43.4%
7bipB01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.53 41.0 2.55e-01 88.5% 77.7%
1y88A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 40.0 3.94e-01 92.3% 96.6%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.52e-01 82.7% 72.7%
2b81C00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.50 41.0 2.65e-01 100.0% 93.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4319375 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.75 64.0 4.38e-01 100.0% 30.8%
4160431 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.75 64.0 4.38e-01 100.0% 31.1%
4934163 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.72 61.0 4.22e-01 100.0% 28.7%
5077046 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.74e-01 80.8% 87.3%
3981690 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.62 47.0 3.92e-01 82.7% 56.8%
4010023 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 4.30e-01 80.8% 66.2%
4895784 101.1.2.623 alpha arrays › HTH › HTH › winged helix domain › PF25983 0.61 45.0 4.20e-01 80.8% 73.1%
4976675 4159.1.1.0 alpha arrays › SP0561-like › SP0561-like › SP0561-like 0.60 48.0 4.61e-01 98.1% 87.7%
5065949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.19e-01 80.8% 83.3%
5067395 101.1.2.673 alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.58 44.0 3.88e-01 84.6% 72.5%
5048146 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 4.29e-01 80.8% 92.0%
3786594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 42.0 3.50e-01 78.8% 55.6%
3920862 101.1.1.221 alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 0.56 41.0 4.23e-01 82.7% 90.0%
4129689 101.1.1.22 alpha arrays › HTH › HTH › Three-helical HTH › PapB 0.55 47.0 4.09e-01 96.2% 79.7%
3636947 101.1.3.9 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 0.55 42.0 4.36e-01 82.7% 94.0%
5079731 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.91e-01 86.5% 68.6%
4675464 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.53 41.0 3.80e-01 88.5% 82.9%
3438695 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.52 39.0 3.58e-01 88.5% 81.3%