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PH2015_14_scaffold_1_prodigal-single.1__X__X__00053
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00053
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-79
Domain cluster:
rep: MZ334525__UBF23265.1__HATV-2-gp114__00114__D7-72
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.66 | 52.0 | 4.72e-01 | 86.8% | 81.7% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.63 | 52.0 | 4.61e-01 | 97.4% | 65.0% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.61 | 42.0 | 3.53e-01 | 72.4% | 89.7% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.61 | 45.0 | 3.21e-01 | 78.9% | 78.3% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.60 | 51.0 | 4.47e-01 | 100.0% | 70.0% |
| 4bwgD00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 37.0 | 3.43e-01 | 100.0% | 50.5% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 42.0 | 4.01e-01 | 85.5% | 66.3% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.57 | 43.0 | 4.28e-01 | 84.2% | 85.5% |
| 4upiA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.57 | 42.0 | 2.58e-01 | 78.9% | 78.4% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.57 | 43.0 | 4.26e-01 | 84.2% | 82.1% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.56 | 49.0 | 3.88e-01 | 97.4% | 78.1% |
| 3qv0A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.56 | 47.0 | 3.59e-01 | 97.4% | 39.7% |
| 1nycA00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.55 | 44.0 | 3.89e-01 | 85.5% | 92.8% |
| 6hoxA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 48.0 | 3.49e-01 | 100.0% | 87.1% |
| 6k34A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 41.0 | 2.78e-01 | 81.6% | 39.5% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 48.0 | 3.65e-01 | 100.0% | 71.1% |
| 3v5nB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 46.0 | 3.45e-01 | 93.4% | 76.6% |
| 5cxbA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 38.0 | 2.52e-01 | 76.3% | 36.3% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 46.0 | 3.59e-01 | 97.4% | 78.7% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 42.0 | 2.80e-01 | 88.2% | 92.9% |
| 3dtyB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 45.0 | 3.39e-01 | 92.1% | 75.7% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 39.0 | 2.63e-01 | 80.3% | 34.6% |
| 4dooA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.53 | 46.0 | 3.65e-01 | 94.7% | 81.2% |
| 2r1bA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.43e-01 | 98.7% | 56.6% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.53 | 41.0 | 3.98e-01 | 90.8% | 83.5% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.53 | 43.0 | 3.69e-01 | 89.5% | 75.4% |
| 5jozA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 44.0 | 2.91e-01 | 90.8% | 86.6% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.52 | 41.0 | 3.11e-01 | 86.8% | 67.0% |
| 2bf1A00 | 2.170.40.20 | Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein | 0.52 | 42.0 | 2.92e-01 | 93.4% | 77.6% |
| 1pz7A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.43e-01 | 98.7% | 79.3% |
| 1iwlA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 46.0 | 3.52e-01 | 100.0% | 66.7% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 45.0 | 3.72e-01 | 98.7% | 57.4% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.52 | 38.0 | 2.79e-01 | 81.6% | 45.8% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.52 | 45.0 | 3.40e-01 | 96.1% | 81.2% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 41.0 | 2.55e-01 | 86.8% | 98.9% |
| 1ya5T01 | 2.20.160.10 | Mainly Beta › Single Sheet › titin filament fold › titin domain like | 0.51 | 41.0 | 4.03e-01 | 85.5% | 100.0% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.66e-01 | 81.6% | 54.8% |
| 3u7vA02 | 2.60.220.20 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus | 0.51 | 44.0 | 3.61e-01 | 97.4% | 88.2% |
| 5frdA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 37.0 | 2.64e-01 | 78.9% | 49.6% |
| 2xepB02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 44.0 | 3.13e-01 | 100.0% | 63.3% |
| 4meaA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 36.0 | 2.44e-01 | 76.3% | 57.1% |
| 3m2tA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 39.0 | 3.12e-01 | 81.6% | 91.4% |
| 3c7fA02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 43.0 | 2.88e-01 | 100.0% | 93.3% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 43.0 | 3.36e-01 | 100.0% | 73.8% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3929256 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.69 | 61.0 | 5.04e-01 | 100.0% | 59.3% |
| 3497478 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.67 | 47.0 | 3.38e-01 | 72.4% | 27.4% |
| 5048066 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.67 | 55.0 | 5.00e-01 | 100.0% | 66.7% |
| 3272364 | 206.1.2.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K | 0.65 | 51.0 | 3.48e-01 | 84.2% | 52.2% |
| 377931 | 63.1.1.2 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Man-6-P_recep | 0.62 | 45.0 | 3.72e-01 | 77.6% | 81.6% |
| 3588182 | 9.16.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 | 0.62 | 49.0 | 4.36e-01 | 84.2% | 83.8% |
| 3235525 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.61 | 43.0 | 3.24e-01 | 100.0% | 28.5% |
| 3952629 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.61 | 53.0 | 3.63e-01 | 100.0% | 42.8% |
| 3961116 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.60 | 53.0 | 3.54e-01 | 100.0% | 39.4% |
| 3990696 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.60 | 50.0 | 3.69e-01 | 100.0% | 35.0% |
| 3979195 | 274.1.1.35 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 | 0.60 | 44.0 | 3.74e-01 | 88.2% | 47.2% |
| 3519635 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.60 | 49.0 | 4.38e-01 | 100.0% | 62.7% |
| 3791631 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.60 | 45.0 | 2.88e-01 | 81.6% | 92.6% |
| 4174947 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.60 | 41.0 | 2.55e-01 | 72.4% | 33.5% |
| 3485746 | 12.2.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › UPF0556 | 0.59 | 50.0 | 4.18e-01 | 93.4% | 96.2% |
| 4265142 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.59 | 48.0 | 3.88e-01 | 100.0% | 46.0% |
| 3204278 | 206.1.2.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K | 0.58 | 46.0 | 2.80e-01 | 84.2% | 33.9% |
| 3229462 | 10.1.1.90 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 | 0.58 | 53.0 | 4.06e-01 | 100.0% | 65.3% |
| 3397105 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.58 | 46.0 | 3.10e-01 | 85.5% | 83.3% |
| 4857919 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.58 | 45.0 | 2.93e-01 | 84.2% | 95.5% |
| 3606497 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.57 | 51.0 | 3.66e-01 | 100.0% | 59.6% |
| 3578232 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.57 | 42.0 | 3.03e-01 | 100.0% | 26.2% |
| 3529118 | 5.1.4.111 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS6 | 0.57 | 50.0 | 3.21e-01 | 98.7% | 25.7% |
| 3984883 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.57 | 43.0 | 3.87e-01 | 84.2% | 62.6% |
| 4951804 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 40.0 | 3.32e-01 | 73.7% | 43.6% |
| 3483435 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 51.0 | 3.85e-01 | 98.7% | 91.1% |
| 5050326 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 44.0 | 3.71e-01 | 81.6% | 52.8% |
| 3213945 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.57 | 45.0 | 2.89e-01 | 86.8% | 91.0% |
| None | — | 0.56 | 43.0 | 3.13e-01 | 85.5% | 34.5% | |
| 3486330 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 35.0 | 4.07e-01 | 88.2% | 96.0% |
| 3615235 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 44.0 | 2.81e-01 | 85.5% | 85.0% |
| 3592053 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.56 | 43.0 | 3.20e-01 | 85.5% | 47.1% |
| 3361063 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.56 | 43.0 | 2.99e-01 | 82.9% | 95.0% |
| 3225729 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.56 | 47.0 | 4.04e-01 | 98.7% | 81.5% |
| 4026678 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.55 | 38.0 | 3.91e-01 | 86.8% | 78.6% |
| 3506312 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 47.0 | 3.97e-01 | 100.0% | 56.3% |
| 4064452 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.54 | 46.0 | 3.81e-01 | 94.7% | 53.6% |
| 1680012 | 3425.2.1.0 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain | 0.54 | 43.0 | 2.77e-01 | 85.5% | 36.3% |
| 4413401 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.54 | 42.0 | 3.21e-01 | 82.9% | 85.3% |
| 3903309 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.54 | 46.0 | 3.46e-01 | 97.4% | 52.5% |
| 3862126 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.54 | 37.0 | 4.04e-01 | 88.2% | 88.3% |
| 3786775 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.54 | 46.0 | 2.81e-01 | 96.1% | 61.3% |
| 3997908 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.54 | 45.0 | 3.55e-01 | 98.7% | 78.9% |
| 3972681 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 43.0 | 4.07e-01 | 90.8% | 87.2% |
| 4586825 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.53 | 41.0 | 2.83e-01 | 88.2% | 98.4% |
| 4000554 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.53 | 42.0 | 2.98e-01 | 92.1% | 41.8% |
| 4055732 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.53 | 46.0 | 3.49e-01 | 98.7% | 69.2% |
| 4404709 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.52 | 47.0 | 3.59e-01 | 100.0% | 77.7% |
| 4679943 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.52 | 40.0 | 3.15e-01 | 81.6% | 49.1% |
| 4295826 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.52 | 38.0 | 2.63e-01 | 80.3% | 47.5% |
| 4390515 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.52 | 46.0 | 3.64e-01 | 100.0% | 84.4% |
| 3856612 | 319.1.1.9 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DPCD | 0.51 | 45.0 | 3.35e-01 | 96.1% | 77.3% |
| 3946837 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.51 | 44.0 | 2.79e-01 | 94.7% | 46.8% |
| 3740580 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 2.97e-01 | 80.3% | 56.6% |
| 3215162 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.51 | 43.0 | 3.33e-01 | 98.7% | 75.7% |
| 3300848 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.50 | 30.0 | 2.76e-01 | 84.2% | 42.7% |
| 5027066 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.50 | 43.0 | 3.73e-01 | 100.0% | 76.8% |
D2
high
residues 84-172
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.61 | 49.0 | 4.53e-01 | 86.5% | 95.6% |
| 4eyyQ02 | 3.20.170.50 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain | 0.61 | 48.0 | 4.44e-01 | 85.4% | 94.7% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 34.0 | 3.80e-01 | 98.9% | 71.8% |
| 7w6yA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.59 | 38.0 | 3.97e-01 | 70.8% | 71.6% |
| 2qngA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.59 | 48.0 | 3.95e-01 | 89.9% | 81.2% |
| 2b0uD02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 33.0 | 3.67e-01 | 85.4% | 70.8% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.57 | 32.0 | 3.60e-01 | 77.5% | 69.0% |
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 38.0 | 3.79e-01 | 73.0% | 84.9% |
| 3foeA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 28.0 | 3.10e-01 | 91.0% | 60.9% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 43.0 | 3.82e-01 | 91.0% | 65.7% |
| 2kjkA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 34.0 | 3.33e-01 | 70.8% | 57.0% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 31.0 | 3.45e-01 | 85.4% | 73.5% |
| 1hqz800 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 42.0 | 3.77e-01 | 87.6% | 62.1% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.53 | 39.0 | 4.11e-01 | 100.0% | 96.0% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.52 | 36.0 | 3.76e-01 | 89.9% | 76.2% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 43.0 | 3.30e-01 | 95.5% | 87.1% |
| 2hi2A00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.52 | 41.0 | 3.46e-01 | 87.6% | 67.5% |
| 1cfyA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 41.0 | 3.65e-01 | 87.6% | 66.9% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 39.0 | 3.80e-01 | 86.5% | 77.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3397229 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 47.0 | 3.46e-01 | 78.7% | 40.9% |
| 3409619 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 44.0 | 3.18e-01 | 78.7% | 40.4% |
| 3397694 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 44.0 | 3.24e-01 | 78.7% | 42.6% |
| 3505004 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.58 | 41.0 | 4.15e-01 | 85.4% | 73.3% |
| 3390505 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.58 | 45.0 | 3.29e-01 | 83.1% | 41.2% |
| 3724875 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 43.0 | 3.06e-01 | 83.1% | 35.0% |
| 3408736 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 43.0 | 3.12e-01 | 83.1% | 39.4% |
| 3416167 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 43.0 | 3.14e-01 | 83.1% | 43.2% |
| 3415802 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 43.0 | 3.06e-01 | 83.1% | 38.6% |
| 4986681 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.56 | 35.0 | 2.94e-01 | 71.9% | 35.5% |
| 4991261 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.55 | 47.0 | 3.49e-01 | 100.0% | 91.9% |
| 4105189 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.54 | 42.0 | 4.16e-01 | 86.5% | 80.0% |
| 4246480 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.54 | 42.0 | 4.16e-01 | 87.6% | 80.0% |
| None | — | 0.54 | 40.0 | 4.08e-01 | 84.3% | 81.2% | |
| 3784810 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.54 | 41.0 | 4.02e-01 | 85.4% | 74.7% |
| 3398231 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 41.0 | 3.15e-01 | 83.1% | 44.4% |
| 3998374 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.53 | 46.0 | 3.57e-01 | 95.5% | 85.0% |
| 3393534 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.53 | 41.0 | 3.14e-01 | 83.1% | 46.9% |
| 3248606 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 42.0 | 3.73e-01 | 87.6% | 61.5% |
| 3708219 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.52 | 35.0 | 3.83e-01 | 91.0% | 85.7% |
| 3941378 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.52 | 39.0 | 3.89e-01 | 86.5% | 74.7% |
| 3915542 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.52 | 33.0 | 3.52e-01 | 87.6% | 71.2% |
| 3947980 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.52 | 41.0 | 4.02e-01 | 89.9% | 78.0% |
| 4976136 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.52 | 31.0 | 3.07e-01 | 73.0% | 54.7% |
| 4984757 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 36.0 | 3.59e-01 | 87.6% | 72.2% |
| 3167601 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.51 | 40.0 | 3.98e-01 | 84.3% | 78.9% |
| 3578827 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.51 | 44.0 | 3.45e-01 | 93.3% | 71.9% |
| 3807987 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.51 | 39.0 | 2.69e-01 | 83.1% | 93.2% |
| 3331262 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.50 | 39.0 | 3.82e-01 | 86.5% | 77.9% |