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PH2015_14_scaffold_1_prodigal-single.1__X__X__00072
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00072
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 34-89
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 59.0 | 5.45e-01 | 82.1% | 97.3% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 59.0 | 5.60e-01 | 83.9% | 92.4% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 58.0 | 5.55e-01 | 83.9% | 92.4% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.75 | 60.0 | 5.13e-01 | 89.3% | 83.9% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 56.0 | 5.34e-01 | 82.1% | 98.5% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 55.0 | 5.39e-01 | 78.6% | 93.3% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 55.0 | 4.51e-01 | 82.1% | 69.5% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 60.0 | 5.31e-01 | 96.4% | 89.5% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.65 | 55.0 | 4.49e-01 | 98.2% | 83.8% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.62 | 42.0 | 3.79e-01 | 73.2% | 53.1% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.61 | 43.0 | 3.41e-01 | 75.0% | 59.2% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.61 | 49.0 | 4.24e-01 | 92.9% | 96.8% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 48.0 | 4.00e-01 | 89.3% | 99.0% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 48.0 | 4.05e-01 | 92.9% | 97.9% |
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 47.0 | 4.13e-01 | 96.4% | 89.0% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 42.0 | 3.98e-01 | 83.9% | 100.0% |
| 1t9mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 38.0 | 2.70e-01 | 71.4% | 58.8% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.56 | 47.0 | 3.81e-01 | 96.4% | 69.2% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 45.0 | 4.09e-01 | 94.6% | 100.0% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 3.78e-01 | 85.7% | 75.9% |
| 3pm9A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.56 | 44.0 | 3.57e-01 | 92.9% | 82.8% |
| 4o1nD01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 46.0 | 3.69e-01 | 94.6% | 80.9% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 45.0 | 3.60e-01 | 92.9% | 82.9% |
| 1fo0B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 3.77e-01 | 100.0% | 82.1% |
| 3bn6A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 43.0 | 3.26e-01 | 92.9% | 98.1% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 45.0 | 3.76e-01 | 98.2% | 51.9% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 44.0 | 3.83e-01 | 100.0% | 85.7% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 43.0 | 3.96e-01 | 100.0% | 95.2% |
| 7aj6H01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 3.65e-01 | 100.0% | 80.7% |
| 8ci9C01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.53 | 43.0 | 2.86e-01 | 100.0% | 22.2% |
| 2qhlD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.60e-01 | 96.4% | 84.4% |
| 1p8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 44.0 | 3.41e-01 | 98.2% | 68.2% |
| 8ezmH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.52e-01 | 98.2% | 82.1% |
| 2j1vA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 41.0 | 3.20e-01 | 92.9% | 78.0% |
| 3f7eA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 39.0 | 3.20e-01 | 91.1% | 79.7% |
| 3zssA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.51e-01 | 98.2% | 72.6% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.43e-01 | 98.2% | 81.2% |
| 4l1dC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.46e-01 | 96.4% | 81.7% |
| 4ydjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 2.80e-01 | 78.6% | 91.9% |
| 2dl9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.53e-01 | 92.9% | 80.9% |
| 3etbL00 | 2.60.40.810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 40.0 | 3.19e-01 | 100.0% | 69.9% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 40.0 | 3.48e-01 | 92.9% | 76.0% |
| 4p2qE01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.42e-01 | 100.0% | 80.2% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032461 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 59.0 | 5.63e-01 | 80.4% | 100.0% |
| 3574742 | 4.1.1.47 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin6 | 0.76 | 60.0 | 5.14e-01 | 87.5% | 87.8% |
| 3624163 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 59.0 | 5.10e-01 | 89.3% | 86.7% |
| 4026408 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.74 | 58.0 | 4.77e-01 | 85.7% | 67.0% |
| 4451993 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.73 | 60.0 | 5.95e-01 | 92.9% | 100.0% |
| 4813032 | 4.1.1.328 ↗ | beta barrels › SH3 › SH3 › SH3 › Sm_like | 0.72 | 51.0 | 4.55e-01 | 75.0% | 93.7% |
| 4335951 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.72 | 63.0 | 5.75e-01 | 98.2% | 100.0% |
| 157624 | 4.1.1.47 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin6 | 0.72 | 60.0 | 5.31e-01 | 96.4% | 89.5% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.71 | 59.0 | 5.57e-01 | 92.9% | 100.0% |
| 4163851 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.71 | 58.0 | 5.73e-01 | 91.1% | 100.0% |
| 3786412 | 4.1.1.344 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31193 | 0.71 | 56.0 | 4.94e-01 | 85.7% | 93.8% |
| 4280097 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.70 | 59.0 | 5.80e-01 | 94.6% | 98.3% |
| 3839016 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.70 | 59.0 | 5.67e-01 | 96.4% | 98.5% |
| 3712219 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.69 | 54.0 | 5.18e-01 | 85.7% | 96.9% |
| 3010131 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.64 | 56.0 | 4.56e-01 | 100.0% | 97.2% |
| 3392470 | 4027.1.1.0 ↗ | beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit | 0.62 | 41.0 | 4.51e-01 | 71.4% | 84.4% |
| 4024940 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 52.0 | 3.80e-01 | 98.2% | 88.2% |
| 5072894 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.62 | 51.0 | 3.28e-01 | 98.2% | 38.3% |
| 3813310 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.60 | 49.0 | 4.04e-01 | 92.9% | 99.0% |
| 3943690 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.60 | 44.0 | 4.35e-01 | 78.6% | 91.4% |
| 3414820 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 48.0 | 3.94e-01 | 91.1% | 66.7% |
| 3572711 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.58 | 45.0 | 3.54e-01 | 89.3% | 87.4% |
| 3910988 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 49.0 | 3.44e-01 | 96.4% | 44.1% |
| 3819239 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.58 | 48.0 | 4.13e-01 | 96.4% | 84.2% |
| 3670169 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.58 | 48.0 | 3.81e-01 | 94.6% | 93.3% |
| 3346140 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 48.0 | 4.11e-01 | 98.2% | 90.5% |
| 3925541 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.57 | 44.0 | 3.48e-01 | 89.3% | 83.1% |
| 3296431 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.57 | 47.0 | 4.06e-01 | 96.4% | 87.4% |
| 3373620 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 47.0 | 4.16e-01 | 98.2% | 91.1% |
| 4567712 | 10.32.1.48 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 | 0.57 | 48.0 | 3.80e-01 | 98.2% | 67.2% |
| 3682359 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.57 | 45.0 | 3.57e-01 | 91.1% | 82.4% |
| 4033546 | 221.1.1.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › MAP | 0.57 | 48.0 | 3.85e-01 | 94.6% | 88.2% |
| 4009311 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.56 | 48.0 | 4.62e-01 | 100.0% | 100.0% |
| 4959031 | 11.4.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) | 0.56 | 43.0 | 3.44e-01 | 87.5% | 92.0% |
| 3526700 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.56 | 45.0 | 3.51e-01 | 94.6% | 64.4% |
| 4511531 | 221.1.1.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › MAP | 0.55 | 46.0 | 3.76e-01 | 94.6% | 86.2% |
| 3032092 | 221.1.1.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › MAP | 0.55 | 46.0 | 3.72e-01 | 98.2% | 81.2% |
| 3936814 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.54 | 42.0 | 3.55e-01 | 89.3% | 98.1% |
| 2709685 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.54 | 45.0 | 3.70e-01 | 94.6% | 91.6% |
| 3908804 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.75e-01 | 96.4% | 56.2% |
| None | — | 0.54 | 41.0 | 3.50e-01 | 89.3% | 76.2% | |
| 4034486 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.54 | 45.0 | 3.35e-01 | 92.9% | 66.9% |
| 4937498 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 43.0 | 3.52e-01 | 96.4% | 71.7% |
| 5022769 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 43.0 | 3.55e-01 | 96.4% | 77.0% |
| 4945544 | 7587.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases | 0.53 | 43.0 | 3.44e-01 | 98.2% | 52.3% |
| 3506970 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.52 | 43.0 | 3.86e-01 | 100.0% | 92.9% |
| 5044223 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 43.0 | 3.64e-01 | 96.4% | 85.0% |
| 4438042 | 11.1.1.365 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like | 0.52 | 40.0 | 3.17e-01 | 89.3% | 82.3% |
| 3474409 | 11.1.1.550 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 | 0.52 | 43.0 | 3.54e-01 | 98.2% | 60.9% |
| 3600957 | 10.41.1.0 ↗ | beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain | 0.52 | 43.0 | 3.56e-01 | 98.2% | 76.4% |
| 3721851 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.51 | 42.0 | 2.65e-01 | 100.0% | 20.3% |
| 5081702 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 42.0 | 3.43e-01 | 98.2% | 80.8% |
| 4075828 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.51 | 42.0 | 2.94e-01 | 98.2% | 39.5% |
| 3233120 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.50 | 34.0 | 3.07e-01 | 100.0% | 50.0% |
| 3915086 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 42.0 | 3.60e-01 | 96.4% | 81.1% |