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PH2015_14_scaffold_1_prodigal-single.1__X__X__00087
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00087
Identity
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
D2
high
residues 87-242
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23474.2 best | Acb1 | 38.9 | 9.70e-10 | 93.0% | 82.8% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 76.0 | 7.17e-01 | 100.0% | 84.0% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.81 | 76.0 | 7.11e-01 | 100.0% | 92.5% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 74.0 | 6.97e-01 | 100.0% | 86.9% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 73.0 | 6.87e-01 | 100.0% | 88.0% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 70.0 | 6.77e-01 | 100.0% | 86.5% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.77 | 73.0 | 6.56e-01 | 100.0% | 86.8% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.77 | 69.0 | 6.80e-01 | 100.0% | 89.8% |
| 1b4bA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.67 | 25.0 | 3.55e-01 | 86.5% | 70.4% |
| 1hi9A02 | 3.30.1360.130 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein | 0.62 | 24.0 | 3.32e-01 | 90.4% | 68.4% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 29.0 | 3.44e-01 | 90.4% | 64.4% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 29.0 | 3.55e-01 | 90.4% | 77.2% |
| 6mavB02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 26.0 | 3.33e-01 | 97.4% | 79.3% |
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.52 | 33.0 | 3.89e-01 | 92.9% | 95.1% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 29.0 | 3.30e-01 | 90.4% | 71.3% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.98e-01 | 96.2% | 93.0% |
| 2zfzD00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 23.0 | 3.12e-01 | 85.3% | 81.0% |
ECOD (81)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 276 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.82 | 76.0 | 7.17e-01 | 100.0% | 84.0% |
| 3338135 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 75.0 | 7.12e-01 | 100.0% | 84.4% |
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 76.0 | 7.33e-01 | 100.0% | 92.6% |
| 3962197 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.81 | 76.0 | 7.42e-01 | 100.0% | 92.9% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 76.0 | 7.09e-01 | 100.0% | 87.8% |
| 5028063 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 74.0 | 7.13e-01 | 100.0% | 86.9% |
| 3233020 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 75.0 | 6.97e-01 | 100.0% | 89.5% |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 75.0 | 7.17e-01 | 100.0% | 88.2% |
| 4965442 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 72.0 | 7.21e-01 | 100.0% | 93.8% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 74.0 | 7.02e-01 | 100.0% | 92.3% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 74.0 | 6.98e-01 | 100.0% | 91.9% |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.79 | 74.0 | 6.82e-01 | 100.0% | 90.3% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 74.0 | 7.06e-01 | 100.0% | 90.0% |
| 5000045 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 74.0 | 6.97e-01 | 100.0% | 87.0% |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 74.0 | 6.82e-01 | 100.0% | 86.7% |
| 3690734 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 71.0 | 7.03e-01 | 100.0% | 90.9% |
| 4946449 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 74.0 | 6.94e-01 | 100.0% | 88.1% |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 74.0 | 6.95e-01 | 100.0% | 88.6% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 74.0 | 7.00e-01 | 100.0% | 89.4% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 74.0 | 6.94e-01 | 100.0% | 87.6% |
| None | — | 0.78 | 74.0 | 7.10e-01 | 100.0% | 89.7% | |
| None | — | 0.78 | 70.0 | 6.76e-01 | 93.6% | 89.4% | |
| 5026546 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 73.0 | 6.97e-01 | 100.0% | 89.4% |
| None | — | 0.78 | 73.0 | 6.90e-01 | 100.0% | 88.0% | |
| 4025967 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.78 | 73.0 | 6.15e-01 | 100.0% | 94.0% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 73.0 | 6.90e-01 | 100.0% | 88.6% |
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 74.0 | 6.97e-01 | 100.0% | 86.9% |
| 5030633 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 73.0 | 6.82e-01 | 100.0% | 86.7% |
| 3982264 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 71.0 | 6.82e-01 | 100.0% | 86.2% |
| 4951894 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 73.0 | 6.73e-01 | 100.0% | 82.6% |
| None | — | 0.78 | 73.0 | 6.87e-01 | 100.0% | 88.0% | |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 73.0 | 6.58e-01 | 100.0% | 80.0% |
| 4967857 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 71.0 | 6.75e-01 | 97.4% | 88.3% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 72.0 | 6.84e-01 | 100.0% | 88.5% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 72.0 | 6.75e-01 | 98.7% | 85.4% |
| None | — | 0.77 | 73.0 | 6.90e-01 | 100.0% | 88.3% | |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 72.0 | 6.89e-01 | 100.0% | 90.0% |
| None | — | 0.77 | 70.0 | 6.80e-01 | 100.0% | 88.8% | |
| 4046553 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 70.0 | 6.79e-01 | 100.0% | 88.2% |
| 5063905 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 69.0 | 6.73e-01 | 100.0% | 87.6% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 66.0 | 6.54e-01 | 100.0% | 86.1% |
| 4972305 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 72.0 | 6.88e-01 | 100.0% | 87.6% |
| 4932664 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 72.0 | 6.80e-01 | 100.0% | 87.4% |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 72.0 | 6.86e-01 | 100.0% | 88.9% |
| 3412490 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 72.0 | 6.50e-01 | 100.0% | 88.8% |
| 1953031 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 70.0 | 6.69e-01 | 100.0% | 85.7% |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 71.0 | 6.68e-01 | 100.0% | 87.2% |
| 4937535 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 71.0 | 6.86e-01 | 100.0% | 89.7% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 71.0 | 6.72e-01 | 100.0% | 87.0% |
| 3216833 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 71.0 | 6.31e-01 | 100.0% | 89.0% |
| 3738455 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 71.0 | 6.58e-01 | 100.0% | 89.2% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 72.0 | 6.82e-01 | 100.0% | 87.7% |
| 5055911 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 71.0 | 6.80e-01 | 100.0% | 88.3% |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 71.0 | 6.71e-01 | 100.0% | 87.6% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 71.0 | 6.73e-01 | 100.0% | 87.0% |
| 4949121 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 71.0 | 6.79e-01 | 100.0% | 88.3% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 71.0 | 6.74e-01 | 100.0% | 88.3% |
| 3464521 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 70.0 | 6.22e-01 | 100.0% | 86.8% |
| 4031839 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 68.0 | 6.64e-01 | 100.0% | 88.8% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 70.0 | 6.63e-01 | 100.0% | 89.1% |
| 4957217 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 71.0 | 6.71e-01 | 100.0% | 87.8% |
| 5058094 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 70.0 | 6.78e-01 | 100.0% | 89.1% |
| 3995136 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 58.0 | 5.93e-01 | 79.5% | 99.3% |
| 4979619 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 66.0 | 6.42e-01 | 93.6% | 88.8% |
| 3270425 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.75 | 70.0 | 6.44e-01 | 100.0% | 93.8% |
| 4991838 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 55.0 | 5.92e-01 | 82.1% | 88.7% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 69.0 | 6.66e-01 | 100.0% | 88.6% |
| 3616225 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 69.0 | 6.14e-01 | 100.0% | 83.6% |
| 3182683 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.74 | 69.0 | 6.16e-01 | 100.0% | 86.0% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.74 | 69.0 | 6.53e-01 | 100.0% | 90.6% |
| 3744563 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.73 | 68.0 | 6.43e-01 | 100.0% | 90.0% |
| 3635528 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.70 | 65.0 | 5.79e-01 | 100.0% | 84.5% |
| 3495739 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.70 | 50.0 | 5.18e-01 | 73.1% | 82.8% |
| 3483252 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.67 | 47.0 | 4.93e-01 | 71.8% | 92.1% |
| 3971355 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.65 | 31.0 | 4.03e-01 | 89.1% | 80.0% |
| 3503012 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.60 | 25.0 | 2.87e-01 | 90.4% | 47.1% |
| 3182852 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.60 | 56.0 | 5.14e-01 | 100.0% | 98.0% |
| 3978396 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 34.0 | 4.02e-01 | 88.5% | 87.0% |
| 4009025 | 304.4.1.21 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD | 0.57 | 34.0 | 3.94e-01 | 89.1% | 83.8% |
| 4048892 | 304.4.1.21 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD | 0.55 | 33.0 | 3.77e-01 | 89.1% | 80.9% |
| 3586974 | 306.2.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C | 0.52 | 23.0 | 3.08e-01 | 82.7% | 78.5% |