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PH2015_14_scaffold_1_prodigal-single.1__X__X__00101
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00101
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-50
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 67.0 | 6.12e-01 | 84.4% | 67.3% |
| 3emuA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.84 | 62.0 | 4.22e-01 | 93.3% | 24.3% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.83 | 59.0 | 3.95e-01 | 86.7% | 21.0% |
| 4ki9A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.83 | 61.0 | 4.07e-01 | 93.3% | 22.3% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 65.0 | 5.84e-01 | 84.4% | 63.8% |
| 3rd8A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.82 | 56.0 | 5.24e-01 | 88.9% | 59.3% |
| 1zzwA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.81 | 59.0 | 4.06e-01 | 93.3% | 23.8% |
| 1yn9B00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.81 | 60.0 | 4.00e-01 | 95.6% | 21.3% |
| 5bpdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 63.0 | 5.24e-01 | 84.4% | 57.3% |
| 3hc1A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.79 | 56.0 | 3.34e-01 | 88.9% | 11.4% |
| 1zx3A01 | 1.10.287.1020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like | 0.75 | 52.0 | 4.20e-01 | 73.3% | 38.8% |
| 4jmjA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.73 | 53.0 | 3.57e-01 | 95.6% | 19.9% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.73 | 62.0 | 4.08e-01 | 100.0% | 25.2% |
| 4h15A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.73 | 60.0 | 3.77e-01 | 100.0% | 16.9% |
| 2is6A04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.70 | 56.0 | 3.81e-01 | 88.9% | 26.7% |
| 2rinA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.70 | 54.0 | 3.66e-01 | 97.8% | 22.5% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.70 | 62.0 | 5.02e-01 | 97.8% | 79.0% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 59.0 | 4.71e-01 | 100.0% | 78.2% |
| 3i9v201 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.64 | 44.0 | 3.83e-01 | 91.1% | 45.8% |
| 1uaaA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.64 | 47.0 | 3.26e-01 | 82.2% | 26.5% |
| 3tm8B00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.63 | 47.0 | 2.88e-01 | 88.9% | 12.4% |
| 3sdbA03 | 1.10.10.1140 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Glutamine-dependent NAD+ synthetase, C-terminal domain | 0.63 | 47.0 | 3.58e-01 | 88.9% | 44.7% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.61 | 42.0 | 3.76e-01 | 75.6% | 64.8% |
| 2afbB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 45.0 | 2.71e-01 | 82.2% | 26.7% |
| 1z1nX02 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.61 | 49.0 | 3.78e-01 | 97.8% | 41.9% |
| 7ar7E01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.61 | 44.0 | 4.07e-01 | 86.7% | 58.7% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.61 | 51.0 | 4.09e-01 | 100.0% | 68.8% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 44.0 | 4.42e-01 | 82.2% | 78.7% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.56 | 45.0 | 3.15e-01 | 95.6% | 39.9% |
| 3bg3A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 45.0 | 2.71e-01 | 100.0% | 20.9% |
| 4w78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 35.0 | 2.60e-01 | 82.2% | 26.0% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067590 | 103.12.1.14 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 | 0.85 | 66.0 | 6.35e-01 | 82.2% | 74.0% |
| 5032962 | 103.12.1.14 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 | 0.85 | 65.0 | 5.71e-01 | 82.2% | 57.8% |
| 4947248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 59.0 | 4.27e-01 | 77.8% | 34.8% |
| 5022243 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.80 | 63.0 | 4.31e-01 | 88.9% | 26.2% |
| 4033200 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 61.0 | 6.20e-01 | 93.3% | 86.7% |
| 5039660 | 2004.1.1.22 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat | 0.76 | 66.0 | 4.02e-01 | 100.0% | 78.3% |
| 3480122 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.75 | 56.0 | 3.96e-01 | 95.6% | 26.7% |
| 5080578 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.75 | 56.0 | 5.29e-01 | 82.2% | 67.3% |
| 3503529 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 47.0 | 4.88e-01 | 73.3% | 70.0% |
| 4999876 | 172.1.1.1 ↗ | alpha complex topology › Citrate synthase-like › Citrate synthase › Citrate synthase › Citrate_synt | 0.74 | 64.0 | 3.73e-01 | 95.6% | 24.7% |
| 4982322 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.74 | 52.0 | 3.31e-01 | 75.6% | 32.7% |
| 3481218 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 63.0 | 3.64e-01 | 97.8% | 23.6% |
| 3493528 | 109.4.1.2245 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27652 | 0.72 | 63.0 | 3.61e-01 | 97.8% | 22.4% |
| 4934097 | 102.3.1.0 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain | 0.70 | 51.0 | 4.16e-01 | 95.6% | 42.4% |
| 3219210 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.69 | 45.0 | 4.44e-01 | 71.1% | 62.0% |
| 3245973 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 56.0 | 3.23e-01 | 100.0% | 10.0% |
| 3449836 | 109.4.1.3366 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LRRK2, PF27652, PF30701 | 0.66 | 57.0 | 3.26e-01 | 100.0% | 23.7% |
| 4266784 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.66 | 49.0 | 2.72e-01 | 82.2% | 6.7% |
| 3887634 | 109.4.1.2146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27652, PF30701 | 0.66 | 57.0 | 3.26e-01 | 100.0% | 21.1% |
| 3591004 | 3355.1.1.8 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter | 0.66 | 56.0 | 3.24e-01 | 100.0% | 70.2% |
| 4988614 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.66 | 49.0 | 4.39e-01 | 88.9% | 57.8% |
| 3420347 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.64 | 43.0 | 3.56e-01 | 71.1% | 36.5% |
| 4935513 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.64 | 55.0 | 4.00e-01 | 100.0% | 53.8% |
| 4440201 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.64 | 44.0 | 3.79e-01 | 91.1% | 44.0% |
| 4949988 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.64 | 55.0 | 3.92e-01 | 100.0% | 47.9% |
| 5057993 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.63 | 53.0 | 3.88e-01 | 100.0% | 71.9% |
| 5032423 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.63 | 53.0 | 3.81e-01 | 100.0% | 64.8% |
| 5007095 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.62 | 53.0 | 3.83e-01 | 97.8% | 51.5% |
| 5012854 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.61 | 52.0 | 3.93e-01 | 100.0% | 87.0% |
| 5065662 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.61 | 53.0 | 4.60e-01 | 100.0% | 64.3% |
| 5063352 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.60 | 51.0 | 3.78e-01 | 100.0% | 74.6% |
| 3782887 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.60 | 48.0 | 3.40e-01 | 97.8% | 50.9% |
| 5066144 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 49.0 | 3.77e-01 | 100.0% | 84.3% |
| 3587165 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 42.0 | 4.07e-01 | 95.6% | 67.3% |
| 3255248 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.55 | 42.0 | 3.79e-01 | 95.6% | 58.6% |
| 3284182 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.54 | 46.0 | 2.85e-01 | 100.0% | 16.2% |
| 5027452 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 2.90e-01 | 86.7% | 84.5% |
| 3196340 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.51 | 42.0 | 2.76e-01 | 95.6% | 31.0% |