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PH2015_14_scaffold_1_prodigal-single.1__X__X__00121
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00121
Identity
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-89
Domain cluster:
rep: KY629563.1__ARK07524.1__LAV_00149__00124__D10-119
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.85 | 64.0 | 6.75e-01 | 78.3% | 92.1% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.75 | 49.0 | 5.72e-01 | 78.3% | 94.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 44.0 | 5.05e-01 | 80.7% | 87.1% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.69 | 50.0 | 3.85e-01 | 75.9% | 41.0% |
| 4oelB00 | 2.40.50.170 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C | 0.67 | 45.0 | 4.93e-01 | 71.1% | 82.6% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 43.0 | 4.80e-01 | 84.3% | 84.6% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 41.0 | 4.87e-01 | 73.5% | 96.2% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.63 | 44.0 | 4.36e-01 | 73.5% | 81.1% |
| 2jmcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 33.0 | 3.46e-01 | 72.3% | 53.2% |
| 1o5yA00 | 3.10.690.10 | Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain | 0.60 | 43.0 | 3.61e-01 | 73.5% | 83.9% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.60 | 34.0 | 3.24e-01 | 88.0% | 46.5% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 46.0 | 3.09e-01 | 84.3% | 56.4% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 42.0 | 4.51e-01 | 80.7% | 84.9% |
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 46.0 | 3.93e-01 | 83.1% | 51.9% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 4.18e-01 | 90.4% | 72.6% |
| 3bg3A01 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.57 | 34.0 | 3.18e-01 | 88.0% | 47.5% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 4.24e-01 | 89.2% | 92.3% |
| 2elbA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 46.0 | 4.30e-01 | 90.4% | 80.4% |
| 3fm2A00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.56 | 45.0 | 4.01e-01 | 94.0% | 85.0% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.98e-01 | 71.1% | 78.7% |
| 6cz7A01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.55 | 30.0 | 3.34e-01 | 81.9% | 67.7% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 47.0 | 3.30e-01 | 98.8% | 91.4% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 34.0 | 3.73e-01 | 80.7% | 80.0% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.54 | 44.0 | 3.35e-01 | 88.0% | 69.8% |
| 2y8tA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.53 | 26.0 | 3.15e-01 | 77.1% | 69.1% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 4.14e-01 | 73.5% | 95.4% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 42.0 | 3.49e-01 | 100.0% | 49.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 331968 | 4.1.1.55 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF1653 | 0.86 | 65.0 | 6.73e-01 | 78.3% | 89.7% |
| 3387119 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.75 | 47.0 | 4.64e-01 | 77.1% | 58.9% |
| 5000503 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.74 | 46.0 | 4.34e-01 | 81.9% | 52.0% |
| 7380 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.69 | 50.0 | 3.85e-01 | 75.9% | 41.0% |
| 3251559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 40.0 | 5.03e-01 | 72.3% | 98.0% |
| 4519674 | 4.1.1.186 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5397 | 0.68 | 43.0 | 4.99e-01 | 78.3% | 91.4% |
| 4037435 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.67 | 43.0 | 4.65e-01 | 81.9% | 77.1% |
| 3287903 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.66 | 33.0 | 4.17e-01 | 79.5% | 80.0% |
| 4644007 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.66 | 43.0 | 4.90e-01 | 79.5% | 93.2% |
| 4481026 | 4.1.1.407 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29661 | 0.65 | 41.0 | 4.63e-01 | 81.9% | 86.7% |
| 4941620 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 42.0 | 4.80e-01 | 79.5% | 90.0% |
| 4168653 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.65 | 37.0 | 4.60e-01 | 80.7% | 94.0% |
| 5058103 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 44.0 | 4.80e-01 | 95.2% | 86.8% |
| 5069062 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.64 | 41.0 | 4.79e-01 | 75.9% | 93.2% |
| 1144827 | 4.1.1.79 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3601 | 0.63 | 44.0 | 4.38e-01 | 73.5% | 82.0% |
| 3511007 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.63 | 47.0 | 4.13e-01 | 78.3% | 54.2% |
| 4138563 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 42.0 | 4.63e-01 | 80.7% | 87.7% |
| 3553413 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.62 | 46.0 | 4.64e-01 | 79.5% | 76.5% |
| 3768116 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.62 | 46.0 | 3.40e-01 | 79.5% | 30.2% |
| 4641867 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.62 | 46.0 | 3.75e-01 | 79.5% | 63.7% |
| 4948187 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.62 | 45.0 | 4.41e-01 | 75.9% | 72.2% |
| 5042614 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 41.0 | 4.44e-01 | 80.7% | 81.4% |
| 4467360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 40.0 | 4.55e-01 | 80.7% | 95.0% |
| 4621153 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 39.0 | 4.50e-01 | 80.7% | 95.0% |
| 4937122 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.58 | 36.0 | 3.82e-01 | 88.0% | 69.3% |
| 4427477 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 41.0 | 3.96e-01 | 79.5% | 65.3% |
| 3783181 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 42.0 | 3.84e-01 | 80.7% | 58.2% |
| 3770803 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.57 | 50.0 | 4.53e-01 | 94.0% | 75.5% |
| 3932586 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.56 | 44.0 | 3.44e-01 | 90.4% | 41.7% |
| 4989084 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.56 | 26.0 | 3.03e-01 | 75.9% | 56.7% |
| 3392485 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.56 | 41.0 | 4.07e-01 | 81.9% | 72.2% |
| 591 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.55 | 38.0 | 3.98e-01 | 80.7% | 78.9% |
| 3738473 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 42.0 | 3.71e-01 | 81.9% | 68.3% |
| 4173773 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.55 | 38.0 | 3.78e-01 | 73.5% | 70.2% |
| 3507010 | 3794.1.2.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase | 0.55 | 32.0 | 3.01e-01 | 88.0% | 45.7% |
| 4337720 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.54 | 38.0 | 4.21e-01 | 73.5% | 100.0% |
| 4514268 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 36.0 | 3.60e-01 | 73.5% | 66.3% |
| 4077437 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.53 | 40.0 | 3.65e-01 | 79.5% | 84.5% |
| 3720660 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 3.86e-01 | 100.0% | 80.0% |
| 3386702 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.53 | 39.0 | 3.72e-01 | 77.1% | 92.6% |
| 3731474 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.52 | 45.0 | 3.10e-01 | 98.8% | 60.0% |
| None | — | 0.52 | 44.0 | 2.87e-01 | 97.6% | 89.5% | |
| 3478003 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 39.0 | 3.59e-01 | 81.9% | 60.9% |
| 3639522 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.52 | 44.0 | 3.09e-01 | 97.6% | 68.8% |
| 4566577 | 330.16.1.3 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › CEP19 | 0.51 | 38.0 | 3.65e-01 | 79.5% | 77.9% |
| 3686561 | 2003.1.2.102 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 | 0.50 | 43.0 | 2.77e-01 | 98.8% | 89.3% |
| 4070310 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.50 | 38.0 | 3.61e-01 | 78.3% | 93.7% |