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PH2015_14_scaffold_1_prodigal-single.1__X__X__00122

Bact-Vir

PH2015_14_scaffold_1_prodigal-single.1__X__X__00122

Identity

Kingdom:
phage

Quality

95.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-147
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03928.21 best HbpS-like 89.2 3.30e-25 91.2% 91.4%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a2lC00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.96 85.0 8.69e-01 97.3% 93.7%
6bwsB00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.95 83.0 8.63e-01 94.6% 96.4%
4nkpA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.94 81.0 8.64e-01 95.9% 100.0%
3fpwA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.93 77.0 8.38e-01 93.2% 100.0%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.82 73.0 6.90e-01 97.3% 81.1%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 40.0 4.96e-01 81.6% 98.9%
4y2fA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.65 51.0 5.16e-01 99.3% 85.3%
1w63Q00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 42.0 4.25e-01 85.7% 66.2%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 53.0 5.60e-01 99.3% 100.0%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.63 32.0 4.13e-01 95.2% 84.7%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 48.0 5.19e-01 98.0% 98.3%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 57.0 5.40e-01 97.3% 96.6%
2jsxA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.63 26.0 3.55e-01 96.6% 74.6%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 47.0 5.20e-01 95.9% 100.0%
2o0yB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 57.0 5.31e-01 98.0% 93.8%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 30.0 3.97e-01 100.0% 82.4%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 54.0 5.23e-01 93.2% 98.1%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.61 30.0 3.79e-01 99.3% 77.5%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 53.0 4.12e-01 94.6% 100.0%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 55.0 5.19e-01 99.3% 96.1%
4pxeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 3.76e-01 99.3% 68.4%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 31.0 3.72e-01 99.3% 73.7%
5bmnA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 31.0 3.94e-01 94.6% 86.7%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 29.0 3.72e-01 97.3% 82.3%
1yqsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 53.0 4.02e-01 97.3% 99.7%
1zq1C02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.59 36.0 3.78e-01 98.0% 66.4%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 53.0 5.01e-01 98.6% 98.9%
3v3sA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 52.0 4.30e-01 97.3% 100.0%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 41.0 4.31e-01 85.0% 78.4%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 39.0 4.15e-01 85.0% 75.9%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 47.0 4.03e-01 91.2% 100.0%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.55 28.0 3.47e-01 96.6% 76.3%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 25.0 3.16e-01 93.9% 70.0%
2vd3A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 22.0 3.02e-01 91.2% 73.0%
1es2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 44.0 3.67e-01 87.8% 100.0%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 27.0 3.34e-01 82.3% 79.1%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
6884 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.96 85.0 8.67e-01 95.2% 93.7%
3977743 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.95 83.0 8.45e-01 94.6% 91.0%
4962077 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.95 85.0 8.78e-01 97.3% 97.1%
3724976 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.94 82.0 8.22e-01 94.6% 88.7%
3736817 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.94 84.0 8.63e-01 97.3% 97.1%
1124917 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.93 81.0 8.21e-01 96.6% 90.3%
3974762 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.93 81.0 8.30e-01 93.9% 93.6%
4010080 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.92 78.0 8.18e-01 96.6% 95.5%
1098285 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.92 78.0 7.85e-01 96.6% 87.7%
3972702 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.89 79.0 8.03e-01 94.6% 94.4%
4097920 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.85 74.0 7.05e-01 94.6% 80.6%
4467423 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.83 72.0 7.13e-01 95.2% 85.8%
4447297 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.83 72.0 7.16e-01 97.3% 87.6%
4679654 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.83 72.0 6.88e-01 94.6% 81.1%
3743609 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.82 73.0 6.79e-01 99.3% 77.1%
3167512 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.81 74.0 6.91e-01 99.3% 81.1%
3729406 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.77 72.0 6.88e-01 100.0% 88.2%
4355794 223.1.1.66 a+b three layers › Profilin-like › sensor domains › sensor domains › Diacid_rec 0.74 57.0 6.10e-01 100.0% 93.6%
4126306 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.72 37.0 4.76e-01 100.0% 84.7%
4943309 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 52.0 5.77e-01 96.6% 100.0%
5045566 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 49.0 5.62e-01 95.9% 100.0%
4960551 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 54.0 5.55e-01 100.0% 86.4%
4679312 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.69 30.0 3.96e-01 97.3% 73.8%
5048642 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.68 54.0 5.80e-01 99.3% 98.4%
5052689 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.68 54.0 5.83e-01 98.0% 99.2%
4502232 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.68 31.0 4.06e-01 96.6% 77.5%
5050326 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 5.70e-01 100.0% 100.0%
4056930 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.66 32.0 4.21e-01 95.9% 83.5%
4979300 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 53.0 5.68e-01 98.6% 97.7%
5079224 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.66 49.0 5.48e-01 96.6% 100.0%
5072402 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 50.0 5.42e-01 98.6% 95.2%
5049782 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 54.0 5.60e-01 100.0% 95.6%
5049672 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 47.0 5.28e-01 95.9% 99.1%
5052178 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 47.0 5.35e-01 91.8% 100.0%
4970750 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 5.48e-01 97.3% 99.2%
5000860 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 54.0 5.66e-01 100.0% 99.2%
5050348 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 51.0 5.36e-01 98.6% 91.1%
5052872 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 51.0 5.42e-01 98.6% 96.1%
3724223 223.11.1.1 a+b three layers › Profilin-like › N-terminal domain of Apc beta-subunit › N-terminal domain of Apc beta-subunit › Hydantoinase_B 0.64 58.0 5.00e-01 100.0% 88.5%
4929358 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.64 50.0 5.44e-01 93.2% 100.0%
3215570 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.64 49.0 5.32e-01 96.6% 98.3%
3924796 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.64 47.0 5.21e-01 98.0% 98.3%
78361 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.64 48.0 5.25e-01 97.3% 99.1%
5046813 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 48.0 5.31e-01 94.6% 100.0%
5052344 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 51.0 5.43e-01 98.6% 97.7%
4884064 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 49.0 5.33e-01 96.6% 100.0%
4956404 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.63 29.0 3.53e-01 95.9% 66.3%
3623755 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.63 46.0 5.10e-01 94.6% 97.4%
4957253 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 49.0 5.33e-01 98.6% 100.0%
5050494 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 50.0 5.27e-01 98.6% 95.4%
4943133 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 51.0 5.34e-01 98.0% 97.7%
4946587 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 50.0 5.29e-01 94.6% 96.2%
4991121 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 5.15e-01 94.6% 99.1%
4943458 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 50.0 5.32e-01 98.6% 97.7%
5047566 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 47.0 5.19e-01 91.8% 100.0%
5027564 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 50.0 4.98e-01 98.6% 83.3%
5043790 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 49.0 5.21e-01 95.9% 96.1%
4983266 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 50.0 5.30e-01 98.6% 97.7%
4880612 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.61 43.0 4.26e-01 85.0% 68.9%
5046009 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 49.0 5.23e-01 98.6% 96.9%
5050157 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.61 51.0 5.08e-01 98.0% 86.7%
4440297 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 51.0 5.25e-01 98.6% 93.6%
4947218 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 46.0 5.04e-01 92.5% 100.0%
4945992 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 49.0 5.15e-01 96.6% 96.1%
5047768 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 5.40e-01 100.0% 97.8%
4999612 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 5.34e-01 95.2% 100.0%
5074161 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 50.0 5.30e-01 100.0% 100.0%
5045484 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 48.0 5.16e-01 95.2% 96.8%
2140453 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.61 47.0 5.01e-01 97.3% 96.0%
5079496 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 45.0 5.02e-01 91.2% 100.0%
4972247 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 49.0 5.14e-01 99.3% 96.9%
5011372 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.60 28.0 3.38e-01 96.6% 64.2%
4984107 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 47.0 5.02e-01 98.0% 95.4%
4998444 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 51.0 5.31e-01 95.2% 100.0%
5049690 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 50.0 5.17e-01 98.6% 96.4%
5079191 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 48.0 5.11e-01 99.3% 100.0%
5049758 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 48.0 4.89e-01 99.3% 89.7%
4970335 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.59 30.0 3.72e-01 96.6% 78.9%
4980668 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 54.0 4.24e-01 100.0% 50.7%
5072002 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 50.0 5.22e-01 96.6% 100.0%
3226791 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.58 47.0 5.03e-01 94.6% 100.0%
3250283 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.58 47.0 5.01e-01 98.6% 98.5%
4002901 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.57 47.0 4.83e-01 98.6% 92.1%
3597515 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 4.43e-01 98.6% 89.6%
4967398 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.56 30.0 3.51e-01 96.6% 73.0%
5048714 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 48.0 4.97e-01 98.0% 99.3%
4007550 223.1.1.162 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30420 0.55 40.0 3.67e-01 83.0% 56.9%
4652297 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.55e-01 85.0% 57.0%