←Back to structures
PH2015_14_scaffold_1_prodigal-single.1__X__X__00127
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00127
Identity
- Kingdom:
- phage
Quality
69.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-96
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bg7A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.62 | 36.0 | 3.46e-01 | 87.2% | 49.0% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 43.0 | 4.01e-01 | 97.7% | 59.6% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.59 | 43.0 | 3.31e-01 | 75.6% | 69.3% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.56 | 42.0 | 4.13e-01 | 89.5% | 75.0% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 34.0 | 3.54e-01 | 91.9% | 63.7% |
| 2kvkA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 45.0 | 3.77e-01 | 86.0% | 79.9% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 45.0 | 4.24e-01 | 89.5% | 96.2% |
| 3kysA00 | 2.70.50.80 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.56 | 43.0 | 3.33e-01 | 84.9% | 84.1% |
| 3h6rA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 33.0 | 2.82e-01 | 88.4% | 33.6% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 40.0 | 3.68e-01 | 81.4% | 65.5% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.72e-01 | 87.2% | 63.6% |
| 1qs8A01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 44.0 | 3.51e-01 | 93.0% | 81.1% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 41.0 | 2.75e-01 | 87.2% | 36.2% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 36.0 | 3.07e-01 | 73.3% | 73.8% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 45.0 | 3.64e-01 | 96.5% | 97.5% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 3.77e-01 | 91.9% | 100.0% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 45.0 | 3.66e-01 | 100.0% | 72.9% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.51 | 42.0 | 3.67e-01 | 96.5% | 74.0% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 36.0 | 3.41e-01 | 94.2% | 61.5% |
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.51 | 36.0 | 3.09e-01 | 73.3% | 66.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3211832 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 44.0 | 3.03e-01 | 76.7% | 20.5% |
| 3404964 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.61 | 44.0 | 4.00e-01 | 75.6% | 93.0% |
| 3705431 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 45.0 | 4.18e-01 | 87.2% | 60.9% |
| 3492201 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.59 | 37.0 | 3.93e-01 | 94.2% | 72.0% |
| 3939474 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 39.0 | 3.25e-01 | 97.7% | 39.3% |
| 2464202 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.59 | 36.0 | 3.70e-01 | 96.5% | 62.7% |
| 3459798 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 47.0 | 3.17e-01 | 89.5% | 26.9% |
| 5045702 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.58 | 41.0 | 3.02e-01 | 74.4% | 38.0% |
| 3731204 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 44.0 | 2.92e-01 | 83.7% | 21.8% |
| 3465186 | 5.1.8.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 | 0.57 | 43.0 | 3.80e-01 | 80.2% | 73.8% |
| 3198094 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.57 | 35.0 | 3.62e-01 | 90.7% | 63.7% |
| 3608102 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 41.0 | 4.41e-01 | 87.2% | 92.9% |
| 3782947 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.56 | 39.0 | 3.57e-01 | 73.3% | 52.5% |
| 3593482 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.56 | 46.0 | 4.41e-01 | 90.7% | 85.0% |
| 3719431 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 40.0 | 2.87e-01 | 76.7% | 37.6% |
| 3839094 | 234.3.1.6 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › DUF3519, PBECR3 | 0.56 | 36.0 | 2.87e-01 | 79.1% | 30.6% |
| 3206009 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 45.0 | 3.02e-01 | 88.4% | 27.8% |
| 4609498 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.54 | 41.0 | 4.22e-01 | 89.5% | 87.5% |
| 3384583 | 5.1.4.38 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 | 0.54 | 42.0 | 2.73e-01 | 83.7% | 22.5% |
| 4945471 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 36.0 | 3.89e-01 | 80.2% | 87.7% |
| 5080416 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.54 | 43.0 | 3.01e-01 | 86.0% | 33.1% |
| 3603448 | 3291.1.1.49 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › NFACT_N | 0.54 | 39.0 | 3.19e-01 | 100.0% | 40.0% |
| 3240661 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 46.0 | 3.52e-01 | 98.8% | 45.0% |
| 4948454 | 3053.1.1.1 ↗ | beta barrels › barrel domain in putative modulator of DNA gyrase, PmbA/TldD › barrel domain in putative modulator of DNA gyrase, PmbA/TldD › barrel domain in putative modulator of DNA gyrase, PmbA/TldD › PmbA_TldD_3rd | 0.53 | 45.0 | 3.41e-01 | 100.0% | 70.4% |
| 3242795 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.53 | 46.0 | 3.67e-01 | 100.0% | 47.2% |
| 3258590 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.53 | 39.0 | 3.84e-01 | 83.7% | 72.6% |
| 4863266 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.53 | 33.0 | 3.72e-01 | 81.4% | 84.6% |
| 3589823 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 35.0 | 3.92e-01 | 74.4% | 90.8% |
| 3271880 | 223.2.1.23 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 | 0.52 | 44.0 | 3.41e-01 | 100.0% | 41.6% |
| 3192492 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.52 | 43.0 | 2.92e-01 | 93.0% | 31.9% |
| 3941070 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.52 | 42.0 | 2.85e-01 | 87.2% | 36.6% |
| 3306468 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.52 | 37.0 | 2.96e-01 | 76.7% | 36.1% |
| 3882182 | 220.1.1.132 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C | 0.51 | 42.0 | 3.74e-01 | 93.0% | 73.1% |
| 3939569 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 35.0 | 3.57e-01 | 76.7% | 72.9% |
| 3392130 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.51 | 25.0 | 2.77e-01 | 93.0% | 56.9% |
| 5055614 | 2.14.1.7 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › DUF6390 | 0.50 | 37.0 | 2.86e-01 | 80.2% | 50.5% |