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PH2015_14_scaffold_1_prodigal-single.1__X__X__00129
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00129
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-66
Domain cluster:
representative
D2
high
residues 83-171
Domain cluster:
rep: NC_049851.1__YP_009904539.1__H1O17_gp161__00161__D101-174
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 51.0 | 5.90e-01 | 74.2% | 86.4% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 51.0 | 6.05e-01 | 71.9% | 93.5% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 50.0 | 6.05e-01 | 78.7% | 100.0% |
| 2jngA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 51.0 | 5.43e-01 | 73.0% | 79.2% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.72 | 51.0 | 4.27e-01 | 73.0% | 65.8% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.72 | 54.0 | 4.52e-01 | 78.7% | 63.4% |
| 4a4kA02 | 2.30.30.1160 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 53.0 | 4.54e-01 | 77.5% | 97.7% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 50.0 | 5.41e-01 | 89.9% | 90.8% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.67 | 36.0 | 4.07e-01 | 85.4% | 67.6% |
| 3oisB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 50.0 | 3.56e-01 | 78.7% | 85.4% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 5.04e-01 | 76.4% | 80.7% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 46.0 | 4.79e-01 | 74.2% | 81.0% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 4.60e-01 | 76.4% | 74.4% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 55.0 | 5.30e-01 | 91.0% | 100.0% |
| 2k4yA00 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.64 | 44.0 | 4.50e-01 | 70.8% | 80.2% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 42.0 | 3.67e-01 | 74.2% | 45.8% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 49.0 | 4.28e-01 | 85.4% | 98.6% |
| 2qggA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.62 | 46.0 | 4.78e-01 | 78.7% | 86.7% |
| 2egeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 41.0 | 4.41e-01 | 70.8% | 92.0% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.59 | 47.0 | 3.84e-01 | 85.4% | 92.1% |
| 2cm4A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 45.0 | 3.92e-01 | 84.3% | 86.2% |
| 2ojhA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 45.0 | 3.14e-01 | 82.0% | 65.3% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.58 | 41.0 | 3.83e-01 | 74.2% | 59.6% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.57 | 41.0 | 3.99e-01 | 75.3% | 85.0% |
| 3nctA00 | 3.40.50.11880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein | 0.57 | 37.0 | 3.20e-01 | 80.9% | 42.3% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 44.0 | 3.82e-01 | 84.3% | 84.0% |
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 44.0 | 3.68e-01 | 87.6% | 84.0% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 40.0 | 3.78e-01 | 76.4% | 90.4% |
| 3o4hA01 | 2.130.10.150 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain | 0.54 | 40.0 | 2.79e-01 | 77.5% | 25.3% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 41.0 | 3.69e-01 | 84.3% | 74.8% |
| 2lc4A00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.69e-01 | 78.7% | 87.4% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 41.0 | 3.87e-01 | 84.3% | 85.2% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.51 | 38.0 | 3.13e-01 | 79.8% | 64.2% |
| 5h9kA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 40.0 | 3.43e-01 | 87.6% | 85.7% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3317030 | 4.1.1.366 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26738 | 0.81 | 51.0 | 6.12e-01 | 73.0% | 95.0% |
| 3886139 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.81 | 55.0 | 6.46e-01 | 74.2% | 96.9% |
| 3575865 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.80 | 55.0 | 6.18e-01 | 76.4% | 90.0% |
| 4420173 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.79 | 51.0 | 5.51e-01 | 74.2% | 77.3% |
| 3781440 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.79 | 58.0 | 6.10e-01 | 76.4% | 98.8% |
| 3368864 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.78 | 55.0 | 6.37e-01 | 75.3% | 100.0% |
| 3627869 | 4.1.1.347 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 | 0.77 | 52.0 | 4.19e-01 | 71.9% | 39.4% |
| 3356605 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.77 | 57.0 | 5.69e-01 | 76.4% | 88.9% |
| 3457106 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.77 | 53.0 | 6.20e-01 | 77.5% | 98.5% |
| 3823780 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.77 | 56.0 | 6.06e-01 | 75.3% | 89.3% |
| 3768346 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.76 | 50.0 | 5.43e-01 | 73.0% | 80.0% |
| 3841414 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.75 | 52.0 | 5.78e-01 | 77.5% | 90.0% |
| 3416068 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.75 | 54.0 | 4.37e-01 | 74.2% | 53.5% |
| 3342814 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.75 | 54.0 | 5.34e-01 | 75.3% | 87.4% |
| 3753231 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.74 | 51.0 | 5.39e-01 | 73.0% | 78.8% |
| 3501337 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.74 | 54.0 | 5.75e-01 | 76.4% | 97.5% |
| 3551576 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.74 | 50.0 | 5.44e-01 | 74.2% | 82.7% |
| 3231154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 51.0 | 5.35e-01 | 85.4% | 78.8% |
| 3339162 | 4.1.1.330 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O | 0.74 | 52.0 | 4.53e-01 | 73.0% | 56.2% |
| 3928430 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.73 | 51.0 | 5.72e-01 | 76.4% | 91.4% |
| 3881126 | 4.1.1.361 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_KDM3B, PWWP_KDM3B, DUF7030 | 0.73 | 53.0 | 3.74e-01 | 74.2% | 27.3% |
| 3333322 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.73 | 58.0 | 4.97e-01 | 83.1% | 99.3% |
| 3487837 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 58.0 | 4.42e-01 | 85.4% | 60.5% |
| 3815495 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.72 | 54.0 | 6.09e-01 | 82.0% | 100.0% |
| 3619619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 52.0 | 5.85e-01 | 84.3% | 95.7% |
| 3246086 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 51.0 | 4.99e-01 | 75.3% | 68.4% |
| 3805095 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.72 | 51.0 | 5.09e-01 | 73.0% | 86.7% |
| 3780847 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.72 | 51.0 | 4.22e-01 | 74.2% | 52.0% |
| 3448975 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.71 | 50.0 | 5.80e-01 | 78.7% | 100.0% |
| 3672445 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 53.0 | 4.40e-01 | 76.4% | 56.6% |
| 4882197 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.71 | 49.0 | 4.43e-01 | 70.8% | 59.3% |
| 3301015 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 50.0 | 5.72e-01 | 76.4% | 100.0% |
| 3827886 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.70 | 49.0 | 5.21e-01 | 73.0% | 93.8% |
| 3275615 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 59.0 | 5.12e-01 | 88.8% | 84.5% |
| 3673944 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.70 | 57.0 | 4.79e-01 | 87.6% | 78.5% |
| 3703970 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 51.0 | 4.81e-01 | 76.4% | 76.2% |
| 3425429 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.69 | 49.0 | 4.65e-01 | 73.0% | 81.0% |
| 3625263 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 54.0 | 5.21e-01 | 82.0% | 79.0% |
| 3660755 | 4.8.1.21 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor | 0.69 | 45.0 | 4.83e-01 | 77.5% | 78.7% |
| 4466506 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 48.0 | 5.16e-01 | 71.9% | 92.0% |
| 3829754 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.69 | 48.0 | 4.69e-01 | 71.9% | 81.1% |
| 3344796 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.69 | 56.0 | 5.78e-01 | 85.4% | 92.8% |
| 3812261 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.68 | 47.0 | 4.36e-01 | 71.9% | 73.0% |
| 4022025 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.68 | 55.0 | 4.62e-01 | 85.4% | 79.3% |
| 4163661 | 4.1.1.446 ↗ | beta barrels › SH3 › SH3 › SH3 › PF30222 | 0.68 | 48.0 | 5.40e-01 | 74.2% | 97.1% |
| 3476336 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.68 | 48.0 | 5.43e-01 | 74.2% | 100.0% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 54.0 | 3.97e-01 | 84.3% | 36.0% |
| 3683850 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.68 | 47.0 | 4.42e-01 | 73.0% | 79.1% |
| 4141828 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 47.0 | 5.11e-01 | 71.9% | 89.2% |
| 4387099 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.67 | 47.0 | 4.92e-01 | 71.9% | 92.5% |
| 3257607 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 47.0 | 5.13e-01 | 73.0% | 93.3% |
| 4027263 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.67 | 51.0 | 4.60e-01 | 79.8% | 75.0% |
| 4168737 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 47.0 | 5.11e-01 | 73.0% | 89.2% |
| 3598499 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 4.30e-01 | 79.8% | 82.1% |
| 3664869 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.66 | 53.0 | 3.98e-01 | 86.5% | 93.6% |
| 3665882 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.66 | 53.0 | 4.54e-01 | 84.3% | 100.0% |
| 3655715 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.66 | 53.0 | 3.89e-01 | 86.5% | 88.3% |
| 3166879 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.66 | 47.0 | 5.36e-01 | 73.0% | 100.0% |
| 3816788 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.66 | 53.0 | 3.91e-01 | 86.5% | 97.0% |
| 4358168 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 46.0 | 4.32e-01 | 73.0% | 64.5% |
| 3520308 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 4.87e-01 | 83.1% | 74.7% |
| 4537528 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 46.0 | 5.14e-01 | 73.0% | 100.0% |
| 3224775 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.65 | 54.0 | 4.02e-01 | 89.9% | 72.3% |
| 3500684 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.65 | 46.0 | 4.79e-01 | 73.0% | 82.5% |
| 4122525 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.64 | 44.0 | 4.70e-01 | 71.9% | 82.7% |
| 3207081 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.63 | 44.0 | 5.10e-01 | 82.0% | 100.0% |
| 3223930 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.63 | 49.0 | 3.65e-01 | 87.6% | 32.6% |
| 4118552 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.62 | 44.0 | 4.74e-01 | 73.0% | 86.7% |
| 3587337 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.62 | 48.0 | 4.01e-01 | 84.3% | 48.7% |
| 3283097 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.62 | 43.0 | 3.99e-01 | 71.9% | 63.6% |
| 3764000 | 219.1.1.78 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 | 0.61 | 47.0 | 4.50e-01 | 82.0% | 69.5% |
| 3593475 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 53.0 | 3.67e-01 | 96.6% | 93.0% |
| 4572937 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.61 | 52.0 | 4.20e-01 | 94.4% | 52.4% |
| 3590884 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.61 | 48.0 | 4.20e-01 | 85.4% | 96.2% |
| 5039793 | 219.1.1.77 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 | 0.57 | 49.0 | 3.75e-01 | 95.5% | 94.6% |
| 3266624 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.56 | 42.0 | 3.91e-01 | 77.5% | 93.6% |
| 3591737 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.56 | 45.0 | 3.55e-01 | 86.5% | 90.4% |
| 3895924 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.54 | 38.0 | 3.28e-01 | 74.2% | 84.8% |
| 3795297 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 40.0 | 3.78e-01 | 85.4% | 81.6% |
| 3499681 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.52 | 36.0 | 3.59e-01 | 84.3% | 68.8% |