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PH2015_14_scaffold_1_prodigal-single.1__X__X__00170

Bact-Vir

PH2015_14_scaffold_1_prodigal-single.1__X__X__00170

Identity

Kingdom:
phage

Quality

86.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02229.23 best PC4 33.8 2.60e-08 80.3% 84.6%
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.86 59.0 4.74e-01 75.8% 39.2%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.83 69.0 6.51e-01 100.0% 75.0%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.83 66.0 6.86e-01 100.0% 91.9%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 52.0 4.88e-01 72.7% 63.3%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 51.0 4.29e-01 77.3% 43.2%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.73 49.0 4.20e-01 80.3% 44.2%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 51.0 3.84e-01 74.2% 33.6%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 54.0 4.22e-01 80.3% 39.3%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.71 50.0 3.74e-01 74.2% 29.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 50.0 4.24e-01 80.3% 44.5%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 50.0 4.76e-01 77.3% 63.2%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 48.0 3.74e-01 74.2% 33.3%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.69 59.0 5.28e-01 100.0% 69.4%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.69 49.0 3.90e-01 74.2% 43.8%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.68 48.0 4.08e-01 72.7% 48.0%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 47.0 3.76e-01 77.3% 36.4%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.67 51.0 4.04e-01 80.3% 46.2%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.66 49.0 3.99e-01 78.8% 43.9%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 49.0 3.38e-01 80.3% 29.0%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 3.85e-01 77.3% 48.4%
5jzjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 44.0 3.97e-01 71.2% 79.8%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 44.0 3.70e-01 74.2% 41.2%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.65 54.0 3.35e-01 100.0% 35.2%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 47.0 3.27e-01 83.3% 34.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.62 43.0 3.69e-01 74.2% 45.3%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 46.0 3.50e-01 81.8% 66.3%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.61 44.0 4.01e-01 77.3% 61.5%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 52.0 3.24e-01 100.0% 48.9%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 39.0 3.09e-01 71.2% 31.9%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 52.0 3.15e-01 100.0% 33.8%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 42.0 3.57e-01 74.2% 43.4%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.59 44.0 3.92e-01 80.3% 56.6%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 42.0 2.65e-01 75.8% 22.4%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.58 43.0 3.36e-01 78.8% 36.3%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 4.18e-01 95.5% 84.4%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 48.0 3.26e-01 100.0% 43.1%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 43.0 3.40e-01 90.9% 38.6%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 42.0 3.29e-01 84.8% 56.6%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.40e-01 83.3% 60.4%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.52e-01 87.9% 46.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.56 49.0 3.10e-01 100.0% 33.0%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.59e-01 89.4% 47.8%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.58e-01 80.3% 27.6%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.54 44.0 3.75e-01 97.0% 53.0%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.54 36.0 2.74e-01 71.2% 28.8%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 38.0 2.75e-01 75.8% 58.7%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.54 41.0 4.05e-01 89.4% 77.5%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 36.0 3.34e-01 74.2% 52.8%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.68e-01 86.4% 87.5%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.53 46.0 3.38e-01 97.0% 50.3%
1ko2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 40.0 2.84e-01 84.8% 86.5%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 36.0 3.81e-01 78.8% 78.3%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 44.0 2.96e-01 100.0% 69.2%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 44.0 3.18e-01 97.0% 92.7%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 43.0 3.36e-01 90.9% 50.3%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 45.0 3.13e-01 95.5% 91.4%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.75e-01 100.0% 91.8%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.53 35.0 2.92e-01 92.4% 34.6%
4lb8A02 2.60.40.3900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.47e-01 97.0% 80.3%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 40.0 3.89e-01 90.9% 78.5%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978676 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.92 85.0 7.88e-01 100.0% 81.2%
1810786 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.89 82.0 7.87e-01 100.0% 87.8%
358014 243.1.1.22 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.86 59.0 4.74e-01 75.8% 39.2%
3492201 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.81 70.0 6.69e-01 100.0% 82.7%
4949068 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.80 56.0 4.65e-01 77.3% 43.6%
3866695 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.78 69.0 5.17e-01 100.0% 41.3%
4983588 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.75 63.0 6.06e-01 100.0% 81.3%
5009761 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.73 52.0 3.96e-01 74.2% 38.6%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.69 46.0 4.95e-01 80.3% 83.6%
3836347 243.3.1.26 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.66 48.0 3.84e-01 75.8% 46.4%
4028363 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 48.0 4.34e-01 84.8% 56.7%
4029991 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 57.0 3.56e-01 100.0% 30.7%
3381759 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.65 53.0 4.15e-01 100.0% 40.7%
3276021 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.65 55.0 3.24e-01 93.9% 16.9%
3487868 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 44.0 4.47e-01 78.8% 72.3%
3962603 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 57.0 4.78e-01 97.0% 62.7%
1491977 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.64 57.0 4.10e-01 97.0% 39.0%
3573723 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.64 55.0 3.26e-01 95.5% 17.1%
4675848 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.63 47.0 3.68e-01 78.8% 41.7%
3979569 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 45.0 3.87e-01 87.9% 46.4%
3482965 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.61 44.0 3.51e-01 75.8% 55.4%
3598659 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.29e-01 100.0% 45.1%
5046475 2.2.1.0 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.60 42.0 3.48e-01 72.7% 65.0%
4942259 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 48.0 3.87e-01 89.4% 95.6%
3959925 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 51.0 4.45e-01 97.0% 63.0%
2516709 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.59 52.0 3.83e-01 97.0% 38.7%
3620578 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 47.0 3.63e-01 92.4% 40.6%
3377087 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.16e-01 100.0% 39.5%
3291496 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.58 50.0 3.44e-01 98.5% 47.8%
4065140 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 41.0 2.78e-01 78.8% 18.5%
3214839 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 50.0 3.77e-01 97.0% 78.1%
3583426 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 46.0 3.72e-01 92.4% 47.9%
3968468 4152.2.1.0 a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.57 48.0 4.63e-01 95.5% 100.0%
4928465 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.56 49.0 3.85e-01 100.0% 47.0%
3625217 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.56 46.0 3.40e-01 97.0% 33.5%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 40.0 3.46e-01 78.8% 47.3%
3871082 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 44.0 3.44e-01 92.4% 39.3%
3340517 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.55 46.0 3.09e-01 100.0% 40.7%
3403394 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.55 39.0 3.06e-01 78.8% 55.3%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 45.0 4.15e-01 100.0% 94.7%
5073876 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 42.0 2.56e-01 84.8% 21.3%
4947567 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 42.0 2.58e-01 84.8% 21.5%
3725129 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.54 48.0 3.68e-01 100.0% 62.6%
3176193 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.53 44.0 3.82e-01 97.0% 62.7%
73522 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.53 36.0 3.17e-01 74.2% 44.0%
4026006 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 36.0 3.43e-01 71.2% 65.0%
3742201 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.53 37.0 3.06e-01 75.8% 44.4%
3692065 301.7.1.0 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.53 37.0 2.49e-01 74.2% 29.8%
4666593 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.53 45.0 3.43e-01 97.0% 56.6%
4583096 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.53 45.0 3.12e-01 97.0% 87.1%
4379531 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.53 41.0 3.04e-01 89.4% 35.9%
3734190 2484.1.1.220 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27033 0.52 42.0 2.96e-01 93.9% 82.9%
3301984 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 36.0 3.83e-01 72.7% 100.0%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 42.0 3.82e-01 95.5% 75.8%
3625247 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 40.0 3.51e-01 90.9% 54.5%
4310932 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 42.0 2.91e-01 95.5% 82.4%
3721174 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.51 41.0 3.35e-01 93.9% 93.6%
2756357 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 43.0 3.03e-01 95.5% 92.1%
3909234 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 43.0 3.64e-01 97.0% 72.2%
4165476 2004.1.1.799 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_27, AAA_29 0.50 39.0 2.38e-01 84.8% 21.3%
3569641 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 3.09e-01 71.2% 71.6%
5045702 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 40.0 2.81e-01 93.9% 37.6%
5036880 330.1.1.35 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.50 34.0 3.42e-01 72.7% 77.1%
D2 high residues 81-144
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8p2bA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.74 41.0 3.78e-01 90.6% 43.8%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.71 42.0 4.45e-01 100.0% 67.3%
2napA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.70 41.0 4.26e-01 100.0% 63.8%
8p2aA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.68 40.0 3.58e-01 92.2% 42.5%
2h3gX01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 37.0 3.30e-01 100.0% 37.5%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 51.0 3.62e-01 92.2% 91.1%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.25e-01 95.3% 67.0%
1x5iA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 4.18e-01 95.3% 59.8%
4omfA00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.59 43.0 2.72e-01 81.2% 87.8%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 43.0 3.32e-01 79.7% 45.2%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 41.0 3.52e-01 100.0% 47.5%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 44.0 3.23e-01 81.2% 41.6%
4v2bA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.06e-01 95.3% 66.0%
2kzxA00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.57 37.0 3.00e-01 100.0% 33.6%
8oqkA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 36.0 3.10e-01 100.0% 41.7%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.55 30.0 2.42e-01 85.9% 25.4%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 43.0 3.32e-01 90.6% 48.8%
1axiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.07e-01 100.0% 68.6%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.17e-01 98.4% 73.9%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.55 43.0 3.15e-01 85.9% 35.8%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.49e-01 96.9% 54.4%
4fzqA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.54 48.0 4.40e-01 93.8% 81.0%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 45.0 3.56e-01 93.8% 71.5%
1qy9A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 45.0 3.33e-01 92.2% 48.5%
3bgyA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.53 44.0 3.15e-01 100.0% 59.3%
3eo5A01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.52 45.0 4.01e-01 92.2% 71.6%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 39.0 3.73e-01 100.0% 71.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4305702 3518.1.1.1 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.73 40.0 3.75e-01 90.6% 43.8%
4971732 1001.1.1.0 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.72 43.0 4.66e-01 100.0% 70.9%
5082974 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.71 38.0 4.49e-01 85.9% 75.6%
4992254 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.71 37.0 4.04e-01 87.5% 60.0%
4981069 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.70 35.0 3.52e-01 98.4% 46.2%
4086202 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.68 42.0 4.27e-01 92.2% 63.1%
6742 244.4.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases, PF27537 0.68 39.0 4.80e-01 98.4% 97.3%
4473128 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.68 42.0 4.27e-01 92.2% 63.1%
4584323 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.68 42.0 4.38e-01 92.2% 68.3%
4117250 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.65 39.0 4.21e-01 89.1% 70.9%
4185103 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.65 41.0 4.22e-01 92.2% 68.3%
4645958 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.65 40.0 4.20e-01 92.2% 68.3%
4889631 244.4.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.63 39.0 3.32e-01 92.2% 38.1%
2575157 244.4.1.2 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.62 37.0 3.59e-01 100.0% 50.7%
3730756 286.1.1.3 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PrpF 0.61 45.0 3.22e-01 79.7% 38.5%
3278025 10.37.1.1 beta sandwiches › jelly-roll › TerD › TerD › TerD 0.60 53.0 4.10e-01 100.0% 82.1%
4039170 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.60 34.0 2.28e-01 100.0% 14.5%
3944001 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.60 40.0 4.24e-01 85.9% 80.0%
3573645 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.59 34.0 2.21e-01 90.6% 11.7%
5054600 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.58 41.0 3.39e-01 100.0% 41.7%
3789849 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.96e-01 95.3% 98.3%
4587270 3986.1.1.1 a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain › LepA_C 0.58 47.0 4.03e-01 93.8% 58.2%
3945792 3953.1.1.2 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 0.56 51.0 4.31e-01 100.0% 80.0%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 46.0 4.17e-01 100.0% 98.9%
4182548 244.4.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.54 42.0 3.77e-01 87.5% 97.9%
4055918 706.2.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 0.53 46.0 4.35e-01 92.2% 84.0%
3930408 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 41.0 3.78e-01 100.0% 66.3%
3518895 391.1.2.9 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.53 40.0 3.63e-01 90.6% 73.0%
4963660 309.1.2.1 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.52 36.0 2.85e-01 73.4% 94.2%
185213 706.2.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 0.52 45.0 4.14e-01 92.2% 77.8%
4324318 11.1.1.230 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YBD 0.52 44.0 3.55e-01 100.0% 72.6%
5045069 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 45.0 2.91e-01 96.9% 94.4%
4547123 706.2.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 0.51 44.0 4.31e-01 90.6% 88.6%
4564292 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 34.0 2.90e-01 96.9% 38.3%
4353919 2007.1.1.10 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase_3 0.51 44.0 3.08e-01 100.0% 28.4%
3926618 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 36.0 2.98e-01 100.0% 40.0%
4052313 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.51 33.0 2.94e-01 100.0% 41.0%
3976919 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 43.0 2.85e-01 95.3% 99.3%
5052006 5.1.4.663 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.51 46.0 2.76e-01 100.0% 19.1%
3788239 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.87e-01 98.4% 41.7%
5056676 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 39.0 3.34e-01 96.9% 53.0%
5058841 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.45e-01 95.3% 78.3%