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PH2015_14_scaffold_1_prodigal-single.1__X__X__00236
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00236
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-119
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ijlB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 42.0 | 3.77e-01 | 71.4% | 64.2% |
| 5fo5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.62e-01 | 71.4% | 78.4% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.57e-01 | 71.4% | 77.5% |
| 1twfA04 | 3.30.1490.180 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii | 0.54 | 37.0 | 4.03e-01 | 71.4% | 100.0% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.53 | 38.0 | 3.50e-01 | 77.9% | 78.5% |
| 3hhgE01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.52e-01 | 72.7% | 79.5% |
| 4fdyA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 38.0 | 3.07e-01 | 80.5% | 62.1% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 65.0 | 7.74e-01 | 75.3% | 100.0% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.90 | 77.0 | 8.13e-01 | 94.8% | 100.0% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 62.0 | 7.27e-01 | 75.3% | 100.0% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 60.0 | 6.69e-01 | 74.0% | 90.3% |
| 3166029 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.80 | 55.0 | 6.29e-01 | 74.0% | 98.2% |
| 3970704 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.80 | 54.0 | 5.87e-01 | 80.5% | 83.1% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.79 | 55.0 | 5.58e-01 | 76.6% | 72.7% |
| 3185732 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.78 | 54.0 | 6.27e-01 | 74.0% | 100.0% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 61.0 | 3.96e-01 | 83.1% | 24.2% |
| 3353525 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.77 | 56.0 | 4.66e-01 | 79.2% | 46.4% |
| 3299119 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.75 | 55.0 | 4.64e-01 | 76.6% | 47.2% |
| 3679146 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.75 | 59.0 | 4.96e-01 | 85.7% | 51.2% |
| 3970261 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.75 | 51.0 | 6.02e-01 | 72.7% | 100.0% |
| 3305689 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.74 | 52.0 | 4.23e-01 | 75.3% | 40.0% |
| 3422876 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.74 | 54.0 | 6.01e-01 | 85.7% | 100.0% |
| 3611431 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.71 | 49.0 | 5.52e-01 | 72.7% | 93.3% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.70 | 49.0 | 5.44e-01 | 72.7% | 93.3% |
| 3386481 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.58 | 46.0 | 4.30e-01 | 88.3% | 87.0% |
| 3585157 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.58 | 37.0 | 4.09e-01 | 76.6% | 78.5% |
| 1512999 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.58 | 45.0 | 4.21e-01 | 88.3% | 87.1% |
| 4979317 | 101.1.2.109 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rio2_N | 0.57 | 39.0 | 3.88e-01 | 72.7% | 87.1% |
| 3969666 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.52 | 36.0 | 3.48e-01 | 74.0% | 78.9% |
| 388408 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.51 | 37.0 | 3.28e-01 | 79.2% | 55.8% |