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PH2015_14_scaffold_1_prodigal-single.1__X__X__00255
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00255
Identity
- Kingdom:
- phage
Quality
69.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-132
Domain cluster:
rep: ON615601.1__UTS51982.1__X__00034__D5-121
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12571.14 best | Phage_tail_fib | 36.4 | 7.30e-09 | 96.2% | 81.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ej8A00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.59 | 44.0 | 4.34e-01 | 77.9% | 95.7% |
| 4yokA02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 40.0 | 4.34e-01 | 70.2% | 100.0% |
| 3kg7B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.56 | 43.0 | 3.36e-01 | 80.9% | 76.8% |
| 1kqrA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 36.0 | 3.37e-01 | 84.7% | 51.9% |
| 5ufvA00 | 2.70.50.70 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.56 | 43.0 | 3.62e-01 | 81.7% | 68.7% |
| 2gx9A00 | 3.30.420.330 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain | 0.56 | 32.0 | 3.32e-01 | 94.7% | 57.9% |
| 1gmiA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 43.0 | 4.30e-01 | 97.7% | 79.3% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 34.0 | 3.77e-01 | 76.3% | 79.2% |
| 2e9wB05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 4.06e-01 | 77.9% | 98.9% |
| 3rwxA02 | 2.40.128.350 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 34.0 | 3.44e-01 | 89.3% | 66.7% |
| 2blfA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 4.00e-01 | 76.3% | 98.2% |
| 3l9bA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 37.0 | 3.84e-01 | 92.4% | 80.2% |
| 4jg5A01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.87e-01 | 92.4% | 89.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928608 | 3899.1.1.0 ↗ | beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 | 0.88 | 77.0 | 7.12e-01 | 96.2% | 74.8% |
| 4932865 | 3899.1.1.0 ↗ | beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 | 0.82 | 74.0 | 7.21e-01 | 93.9% | 100.0% |
| 3439157 | 3698.1.1.2 ↗ | beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C | 0.69 | 56.0 | 4.77e-01 | 86.3% | 90.0% |
| 3268637 | 3698.1.1.1 ↗ | beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT5_C | 0.66 | 59.0 | 5.19e-01 | 96.9% | 83.2% |
| 3939997 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.58 | 35.0 | 4.09e-01 | 87.0% | 86.7% |
| 3621981 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.58 | 44.0 | 4.37e-01 | 95.4% | 77.0% |
| 2573861 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.57 | 40.0 | 4.21e-01 | 83.2% | 81.7% |
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.56 | 38.0 | 3.92e-01 | 96.2% | 72.4% |
| 159493 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.56 | 44.0 | 4.36e-01 | 97.7% | 78.4% |
| 5061425 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 31.0 | 3.86e-01 | 73.3% | 93.3% |
| 3388466 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.55 | 42.0 | 3.95e-01 | 79.4% | 94.2% |
| 4969913 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 31.0 | 3.85e-01 | 70.2% | 96.0% |
| 168661 | 4258.1.1.1 ↗ | mixed a+b and a/b › Ns1 effector domain-like › Ns1 effector domain-like › Ns1 effector domain-like › Flu_NS1 | 0.54 | 31.0 | 3.22e-01 | 94.7% | 57.5% |
| 3681325 | 9.3.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N | 0.53 | 39.0 | 3.61e-01 | 99.2% | 60.6% |
| 2611886 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 31.0 | 3.60e-01 | 71.8% | 84.4% |
| 3881344 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.52 | 34.0 | 4.01e-01 | 77.1% | 97.8% |
| 4981542 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.45e-01 | 72.5% | 89.4% |
D2
medium
residues 138-269