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PH2015_14_scaffold_1_prodigal-single.1__X__X__00265
Bact-VirPH2015_14_scaffold_1_prodigal-single.1__X__X__00265
Identity
- Kingdom:
- phage
Quality
78.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-58
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.84 | 62.0 | 5.12e-01 | 77.8% | 46.2% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 56.0 | 6.13e-01 | 77.8% | 100.0% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.75 | 53.0 | 4.47e-01 | 75.9% | 47.3% |
| 6vmsR00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.73 | 53.0 | 3.36e-01 | 77.8% | 16.2% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.72 | 63.0 | 4.68e-01 | 100.0% | 82.3% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 50.0 | 4.44e-01 | 77.8% | 50.6% |
| 1binA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.71 | 61.0 | 4.57e-01 | 100.0% | 79.7% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.70 | 60.0 | 4.88e-01 | 100.0% | 51.9% |
| 2k0nA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.70 | 53.0 | 4.64e-01 | 83.3% | 58.8% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.69 | 49.0 | 3.19e-01 | 77.8% | 17.4% |
| 6z01B03 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.67 | 57.0 | 4.21e-01 | 100.0% | 74.7% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.66 | 47.0 | 3.24e-01 | 77.8% | 24.0% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.65 | 48.0 | 3.92e-01 | 81.5% | 43.0% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 55.0 | 4.12e-01 | 100.0% | 77.9% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 50.0 | 3.75e-01 | 87.0% | 87.5% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.64 | 51.0 | 4.44e-01 | 90.7% | 67.4% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.64 | 53.0 | 3.74e-01 | 94.4% | 30.9% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 49.0 | 3.59e-01 | 85.2% | 85.2% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 53.0 | 4.40e-01 | 96.3% | 62.0% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 48.0 | 3.57e-01 | 81.5% | 68.9% |
| 6gpxB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 54.0 | 3.52e-01 | 100.0% | 81.0% |
| 8hixR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 46.0 | 2.97e-01 | 77.8% | 15.7% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 52.0 | 3.98e-01 | 98.1% | 87.9% |
| 3u64A00 | 1.25.40.920 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component | 0.63 | 54.0 | 3.47e-01 | 100.0% | 37.3% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 50.0 | 3.77e-01 | 92.6% | 87.5% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 51.0 | 4.63e-01 | 100.0% | 66.7% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.62 | 51.0 | 4.52e-01 | 92.6% | 63.0% |
| 1r9dA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.60 | 52.0 | 2.88e-01 | 98.1% | 16.3% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 46.0 | 4.11e-01 | 98.1% | 59.0% |
| 3rh3A01 | 1.20.120.930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 | 0.59 | 47.0 | 3.54e-01 | 87.0% | 63.2% |
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 4.24e-01 | 74.1% | 86.5% |
| 1ug3A02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 52.0 | 3.96e-01 | 100.0% | 57.8% |
| 2p0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.59 | 49.0 | 2.88e-01 | 90.7% | 40.6% |
| 3emlA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 51.0 | 3.29e-01 | 100.0% | 77.1% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 47.0 | 3.01e-01 | 100.0% | 79.8% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 48.0 | 4.40e-01 | 100.0% | 74.7% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 48.0 | 3.18e-01 | 96.3% | 77.0% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 46.0 | 4.21e-01 | 98.1% | 81.3% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 48.0 | 3.63e-01 | 100.0% | 51.8% |
| 1vj7B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 44.0 | 3.14e-01 | 100.0% | 28.9% |
| 5lnkA00 | 1.20.58.1610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 | 0.54 | 39.0 | 3.14e-01 | 77.8% | 53.0% |
| 6orcB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 41.0 | 3.15e-01 | 85.2% | 34.3% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.53 | 40.0 | 3.85e-01 | 96.3% | 70.3% |
| 3bh1A02 | 1.20.1570.10 | Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like | 0.50 | 41.0 | 3.38e-01 | 90.7% | 77.2% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 42.0 | 3.37e-01 | 100.0% | 80.3% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5069130 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.84 | 61.0 | 6.35e-01 | 77.8% | 84.0% |
| 4933903 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.81 | 72.0 | 4.93e-01 | 100.0% | 51.4% |
| 3549234 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.80 | 58.0 | 4.36e-01 | 77.8% | 32.3% |
| 3854050 | 604.12.1.43 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Tim17 | 0.80 | 58.0 | 4.29e-01 | 77.8% | 31.1% |
| 3408346 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.78 | 67.0 | 6.10e-01 | 100.0% | 89.3% |
| 3720863 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.76 | 67.0 | 4.73e-01 | 100.0% | 32.7% |
| 2579103 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.74 | 52.0 | 4.47e-01 | 75.9% | 47.8% |
| 4172555 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.71 | 63.0 | 5.07e-01 | 100.0% | 87.6% |
| 3912191 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.71 | 51.0 | 3.16e-01 | 77.8% | 13.5% |
| 184733 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.70 | 60.0 | 4.52e-01 | 100.0% | 40.0% |
| 3606961 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.69 | 58.0 | 4.38e-01 | 100.0% | 42.8% |
| 3222651 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.69 | 54.0 | 3.52e-01 | 85.2% | 50.0% |
| 4030141 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.67 | 48.0 | 3.86e-01 | 77.8% | 39.1% |
| 3419863 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 47.0 | 2.95e-01 | 74.1% | 26.9% |
| 4033427 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.65 | 48.0 | 4.43e-01 | 85.2% | 61.4% |
| 4876583 | 109.4.1.1905 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_PRP39_N | 0.64 | 54.0 | 3.23e-01 | 100.0% | 14.4% |
| 3926271 | 174.1.1.56 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › TMD0_ABC | 0.64 | 47.0 | 3.18e-01 | 77.8% | 63.6% |
| 3549844 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.62 | 48.0 | 2.96e-01 | 87.0% | 28.7% |
| 3505748 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.62 | 45.0 | 2.77e-01 | 79.6% | 12.0% |
| 5051258 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.61 | 47.0 | 3.20e-01 | 87.0% | 33.3% |
| 3968183 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.60 | 49.0 | 3.65e-01 | 98.1% | 63.9% |
| 4467738 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.60 | 52.0 | 4.47e-01 | 100.0% | 83.3% |
| 4950248 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.59 | 49.0 | 4.20e-01 | 100.0% | 63.2% |
| 3242420 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.58 | 48.0 | 2.99e-01 | 94.4% | 31.8% |
| None | — | 0.57 | 47.0 | 3.03e-01 | 100.0% | 80.0% | |
| 2870914 | 2500.1.1.3 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like | 0.57 | 49.0 | 2.80e-01 | 100.0% | 17.9% |
| 3678787 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 44.0 | 2.83e-01 | 85.2% | 52.6% |
| 3977423 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.56 | 43.0 | 4.35e-01 | 98.1% | 87.3% |
| 3740259 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.55 | 44.0 | 3.33e-01 | 98.1% | 84.4% |
| 3706364 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 45.0 | 3.30e-01 | 100.0% | 33.1% |
| 4026684 | 192.20.1.7 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 | 0.53 | 46.0 | 3.73e-01 | 100.0% | 65.7% |
| 3356789 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 3.41e-01 | 100.0% | 46.4% |