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PH2015_18_scaffold_2_prodigal-single.1__X__X__00051
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00051
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ia2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 62.0 | 6.04e-01 | 79.0% | 82.4% |
| 1jhfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 62.0 | 6.00e-01 | 83.9% | 97.1% |
| 3dp7B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 61.0 | 5.35e-01 | 83.9% | 66.7% |
| 3lfkD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 69.0 | 5.67e-01 | 96.8% | 74.5% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 57.0 | 5.32e-01 | 77.4% | 79.5% |
| 4ev0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 58.0 | 5.37e-01 | 79.0% | 81.8% |
| 2r3sB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 61.0 | 5.55e-01 | 83.9% | 74.1% |
| 2xkoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 56.0 | 4.90e-01 | 77.4% | 73.4% |
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 60.0 | 5.31e-01 | 83.9% | 67.4% |
| 2vlaA03 | 1.10.10.2090 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.77 | 56.0 | 4.51e-01 | 77.4% | 80.8% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 57.0 | 5.17e-01 | 79.0% | 90.2% |
| 2pexA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 68.0 | 5.20e-01 | 100.0% | 44.9% |
| 4p9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 56.0 | 5.53e-01 | 79.0% | 91.0% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 58.0 | 5.30e-01 | 83.9% | 72.0% |
| 2qenA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 55.0 | 5.30e-01 | 79.0% | 84.3% |
| 1o3sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 54.0 | 5.23e-01 | 77.4% | 98.6% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 54.0 | 4.77e-01 | 77.4% | 61.1% |
| 2plyB01 | 1.10.10.2770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.74 | 59.0 | 4.60e-01 | 88.7% | 63.0% |
| 3majA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 55.0 | 5.58e-01 | 79.0% | 91.7% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 66.0 | 5.71e-01 | 100.0% | 67.4% |
| 3go5A04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 53.0 | 5.34e-01 | 79.0% | 98.4% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 53.0 | 5.09e-01 | 79.0% | 86.3% |
| 2v9vA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 53.0 | 5.18e-01 | 79.0% | 98.6% |
| 3e97A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 53.0 | 4.91e-01 | 77.4% | 87.2% |
| 3d0sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 52.0 | 4.82e-01 | 77.4% | 86.3% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 53.0 | 4.76e-01 | 79.0% | 82.6% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 64.0 | 4.99e-01 | 100.0% | 48.8% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 52.0 | 5.16e-01 | 79.0% | 90.8% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 51.0 | 4.38e-01 | 77.4% | 71.3% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.70 | 62.0 | 4.64e-01 | 100.0% | 51.3% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 51.0 | 4.63e-01 | 77.4% | 82.1% |
| 1xmxA03 | 1.10.10.680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) | 0.69 | 54.0 | 4.90e-01 | 88.7% | 85.4% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 60.0 | 5.40e-01 | 100.0% | 89.7% |
| 2fbkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 61.0 | 4.49e-01 | 100.0% | 41.0% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 59.0 | 4.45e-01 | 100.0% | 40.4% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 59.0 | 4.72e-01 | 100.0% | 50.8% |
| 2k5tA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 42.0 | 3.39e-01 | 80.6% | 40.6% |
| 3p5pA02 | 1.50.10.160 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 40.0 | 2.84e-01 | 75.8% | 58.9% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.56 | 41.0 | 3.39e-01 | 82.3% | 83.6% |
| 2bs2A02 | 3.90.700.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | 0.55 | 46.0 | 3.95e-01 | 100.0% | 96.3% |
| 2o5hA00 | 1.10.3510.10 | Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like | 0.54 | 38.0 | 3.19e-01 | 79.0% | 84.4% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.52 | 45.0 | 3.68e-01 | 95.2% | 71.7% |
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.51 | 34.0 | 3.76e-01 | 75.8% | 93.6% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602284 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.86 | 65.0 | 5.77e-01 | 79.0% | 63.5% |
| 5000261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.86 | 69.0 | 7.00e-01 | 85.5% | 93.3% |
| 4930335 | 101.1.2.385 ↗ | alpha arrays › HTH › HTH › winged helix domain › HRQ1_WHD | 0.85 | 61.0 | 6.05e-01 | 79.0% | 72.3% |
| 3945830 | 101.1.2.153 ↗ | alpha arrays › HTH › HTH › winged helix domain › EutK_C | 0.83 | 62.0 | 6.14e-01 | 79.0% | 86.2% |
| 5054274 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 68.0 | 4.74e-01 | 88.7% | 85.8% |
| 4964343 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 62.0 | 6.50e-01 | 79.0% | 100.0% |
| 5008624 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 61.0 | 5.67e-01 | 79.0% | 64.0% |
| 4039627 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 64.0 | 4.52e-01 | 83.9% | 94.4% |
| 5039734 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 62.0 | 6.13e-01 | 100.0% | 78.1% |
| 4952680 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 65.0 | 6.09e-01 | 85.5% | 85.3% |
| 3943865 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 59.0 | 4.69e-01 | 77.4% | 60.0% |
| 3386729 | 101.1.2.142 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 | 0.80 | 57.0 | 5.57e-01 | 75.8% | 83.8% |
| 5050370 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.80 | 58.0 | 3.96e-01 | 77.4% | 26.2% |
| 3589215 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.80 | 59.0 | 6.19e-01 | 79.0% | 100.0% |
| 4008212 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.79 | 59.0 | 6.00e-01 | 79.0% | 91.7% |
| 5005434 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.79 | 62.0 | 5.36e-01 | 85.5% | 65.3% |
| 3691906 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 58.0 | 4.99e-01 | 80.6% | 90.0% |
| 3956211 | 101.19.1.1 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C | 0.78 | 54.0 | 5.14e-01 | 71.0% | 64.3% |
| 4979220 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 57.0 | 5.61e-01 | 77.4% | 95.4% |
| 5022793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 58.0 | 5.88e-01 | 79.0% | 98.3% |
| 4002772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 62.0 | 5.32e-01 | 88.7% | 79.0% |
| 5055754 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 56.0 | 4.75e-01 | 79.0% | 61.0% |
| 4992883 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 67.0 | 5.96e-01 | 95.2% | 84.7% |
| 5080275 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.76 | 68.0 | 5.43e-01 | 100.0% | 65.8% |
| 5082698 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.76 | 67.0 | 5.91e-01 | 98.4% | 90.0% |
| 3933409 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 56.0 | 5.13e-01 | 79.0% | 81.2% |
| 4978490 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.75 | 58.0 | 4.89e-01 | 83.9% | 56.2% |
| 5028550 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 66.0 | 5.24e-01 | 98.4% | 58.4% |
| 4927188 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 56.0 | 5.86e-01 | 80.6% | 100.0% |
| 4870207 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.75 | 57.0 | 5.10e-01 | 82.3% | 69.8% |
| 5043021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 58.0 | 5.10e-01 | 83.9% | 57.8% |
| 5039496 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.74 | 67.0 | 5.89e-01 | 100.0% | 84.4% |
| 3278821 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 57.0 | 4.85e-01 | 83.9% | 63.0% |
| 4994902 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.74 | 65.0 | 5.45e-01 | 98.4% | 76.2% |
| 4928641 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.74 | 58.0 | 5.53e-01 | 88.7% | 89.3% |
| 4523809 | 101.1.2.281 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tfb2 | 0.73 | 61.0 | 4.41e-01 | 93.5% | 42.8% |
| 4971257 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 65.0 | 4.62e-01 | 100.0% | 45.9% |
| 3587524 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 66.0 | 5.60e-01 | 100.0% | 85.0% |
| 5054189 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 53.0 | 5.44e-01 | 79.0% | 91.7% |
| 5042509 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 55.0 | 5.25e-01 | 83.9% | 93.3% |
| 3997738 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 63.0 | 5.65e-01 | 100.0% | 70.6% |
| 5036500 | 101.1.2.222 ↗ | alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N | 0.71 | 62.0 | 5.64e-01 | 98.4% | 76.5% |
| 4995231 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.71 | 63.0 | 5.60e-01 | 100.0% | 88.9% |
| 4940103 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 52.0 | 5.00e-01 | 79.0% | 70.0% |
| 5039516 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 62.0 | 5.53e-01 | 100.0% | 72.9% |
| 3498206 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 48.0 | 4.79e-01 | 77.4% | 81.5% |
| 4322468 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.67 | 50.0 | 4.46e-01 | 83.9% | 66.3% |
| 4668668 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.66 | 50.0 | 3.25e-01 | 82.3% | 21.4% |
| 3507894 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.66 | 56.0 | 3.87e-01 | 96.8% | 67.9% |
| 5071655 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 59.0 | 5.16e-01 | 98.4% | 67.8% |
| 3514894 | 386.1.1.337 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CCDC174_GRSR | 0.65 | 31.0 | 3.95e-01 | 100.0% | 86.7% |
| 5047762 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 57.0 | 5.61e-01 | 100.0% | 100.0% |
| 3881443 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.63 | 55.0 | 3.58e-01 | 100.0% | 59.0% |
| 3595128 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.61 | 44.0 | 4.36e-01 | 75.8% | 87.7% |
| 3581967 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.56 | 40.0 | 3.99e-01 | 77.4% | 89.2% |
| 3935796 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 40.0 | 3.05e-01 | 88.7% | 54.1% |