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PH2015_18_scaffold_2_prodigal-single.1__X__X__00057
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00057
Identity
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 144-210_223-258
Domain cluster:
rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.80 | 74.0 | 7.20e-01 | 100.0% | 93.9% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.70 | 58.0 | 4.35e-01 | 87.4% | 88.7% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.69 | 58.0 | 4.71e-01 | 88.3% | 85.0% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.69 | 57.0 | 4.30e-01 | 87.4% | 88.5% |
| 8ornD01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.65 | 53.0 | 4.40e-01 | 86.4% | 94.9% |
| 5dl5A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.64 | 49.0 | 3.31e-01 | 82.5% | 97.1% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.64 | 49.0 | 4.41e-01 | 83.5% | 98.6% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.63 | 50.0 | 3.72e-01 | 84.5% | 93.2% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.63 | 52.0 | 4.28e-01 | 87.4% | 93.8% |
| 2h6oA01 | 2.60.40.2800 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 55.0 | 4.93e-01 | 100.0% | 83.9% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.62 | 50.0 | 4.00e-01 | 84.5% | 67.2% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.62 | 51.0 | 3.98e-01 | 88.3% | 90.0% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.62 | 48.0 | 3.78e-01 | 83.5% | 50.9% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.62 | 46.0 | 3.67e-01 | 78.6% | 48.8% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.61 | 54.0 | 4.62e-01 | 100.0% | 90.7% |
| 2o62A02 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 49.0 | 4.45e-01 | 86.4% | 97.8% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 45.0 | 3.87e-01 | 78.6% | 64.8% |
| 3gf6A00 | 2.60.120.750 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF3845 | 0.60 | 53.0 | 4.20e-01 | 100.0% | 80.8% |
| 3sybA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.59 | 51.0 | 3.44e-01 | 95.1% | 98.0% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.59 | 47.0 | 3.74e-01 | 86.4% | 49.8% |
| 3isrA02 | 2.60.40.2250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 39.0 | 4.04e-01 | 100.0% | 71.0% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.58 | 50.0 | 4.33e-01 | 96.1% | 95.1% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.58 | 42.0 | 3.96e-01 | 76.7% | 89.1% |
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.58 | 45.0 | 3.13e-01 | 83.5% | 100.0% |
| 2nykA02 | 2.60.40.2530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 36.0 | 3.83e-01 | 100.0% | 73.6% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 4.31e-01 | 98.1% | 84.2% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.56 | 44.0 | 3.80e-01 | 87.4% | 95.5% |
| 7altB01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 3.62e-01 | 77.7% | 58.2% |
| 8t5tA01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 46.0 | 3.75e-01 | 87.4% | 86.5% |
| 4wxaA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.56 | 39.0 | 4.27e-01 | 94.2% | 89.3% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 34.0 | 3.91e-01 | 91.3% | 85.1% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.55 | 38.0 | 4.10e-01 | 86.4% | 86.9% |
| 7alkA01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.52e-01 | 77.7% | 62.5% |
| 5mw5A01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.62e-01 | 78.6% | 64.9% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 44.0 | 3.83e-01 | 89.3% | 74.1% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.54 | 45.0 | 3.15e-01 | 92.2% | 98.0% |
| 5buvB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 42.0 | 3.59e-01 | 99.0% | 50.9% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 42.0 | 3.18e-01 | 85.4% | 99.2% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.72e-01 | 73.8% | 98.2% |
| 3hwjA00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.53 | 40.0 | 3.60e-01 | 100.0% | 56.4% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.52 | 41.0 | 2.94e-01 | 82.5% | 93.6% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 43.0 | 3.35e-01 | 94.2% | 51.0% |
| 3hrdB01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.51 | 40.0 | 3.43e-01 | 83.5% | 84.1% |
| 4d8oA03 | 2.60.40.2660 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 35.0 | 3.32e-01 | 71.8% | 93.7% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 441034 | 3386.1.1.4 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C | 0.80 | 74.0 | 7.06e-01 | 100.0% | 89.2% |
| 1548777 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.70 | 58.0 | 4.35e-01 | 87.4% | 88.7% |
| 166902 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.69 | 57.0 | 4.30e-01 | 87.4% | 88.5% |
| 3979319 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.69 | 61.0 | 4.36e-01 | 96.1% | 97.3% |
| 5036836 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.67 | 56.0 | 4.22e-01 | 87.4% | 88.7% |
| 5013086 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.66 | 53.0 | 4.16e-01 | 85.4% | 92.5% |
| 4652602 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.66 | 58.0 | 4.11e-01 | 96.1% | 95.3% |
| 4292366 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.66 | 54.0 | 4.40e-01 | 86.4% | 97.3% |
| 4030650 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.66 | 51.0 | 4.49e-01 | 81.6% | 96.7% |
| 4362579 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.66 | 54.0 | 4.49e-01 | 87.4% | 98.9% |
| 4038477 | 5084.3.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 | 0.65 | 57.0 | 4.05e-01 | 96.1% | 93.0% |
| 4311063 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.64 | 53.0 | 4.34e-01 | 87.4% | 91.7% |
| None | — | 0.64 | 49.0 | 4.41e-01 | 83.5% | 98.6% | |
| 4937593 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.64 | 51.0 | 3.96e-01 | 85.4% | 92.7% |
| 4057793 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.63 | 51.0 | 4.33e-01 | 85.4% | 95.8% |
| 4127270 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.63 | 52.0 | 4.33e-01 | 87.4% | 91.4% |
| 3541435 | 271.1.1.5 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › G2F | 0.63 | 50.0 | 3.82e-01 | 84.5% | 49.4% |
| 4638995 | 71.1.1.15 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 | 0.63 | 52.0 | 4.18e-01 | 88.3% | 84.0% |
| 3386839 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.63 | 52.0 | 4.42e-01 | 87.4% | 82.4% |
| 3238206 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.63 | 44.0 | 4.39e-01 | 72.8% | 70.5% |
| 3838722 | 5084.3.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 | 0.62 | 54.0 | 3.88e-01 | 96.1% | 91.1% |
| 4958640 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.61 | 50.0 | 4.25e-01 | 89.3% | 98.9% |
| None | — | 0.61 | 51.0 | 4.15e-01 | 87.4% | 91.7% | |
| 5014023 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.60 | 50.0 | 4.06e-01 | 88.3% | 90.8% |
| 4294796 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.60 | 48.0 | 4.13e-01 | 87.4% | 98.8% |
| 4100165 | 5084.8.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher_TcfC | 0.60 | 44.0 | 2.82e-01 | 74.8% | 23.5% |
| 4545273 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.60 | 46.0 | 4.21e-01 | 81.6% | 97.8% |
| 1146605 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.60 | 49.0 | 4.05e-01 | 87.4% | 92.7% |
| 3220160 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 46.0 | 4.17e-01 | 82.5% | 100.0% |
| 4301684 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.59 | 49.0 | 4.00e-01 | 87.4% | 88.5% |
| 3514135 | 5084.1.1.19 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › BCSC_C | 0.59 | 47.0 | 3.99e-01 | 83.5% | 86.7% |
| 5006751 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.59 | 49.0 | 3.93e-01 | 88.3% | 83.2% |
| 4672378 | 71.1.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin | 0.58 | 48.0 | 3.90e-01 | 87.4% | 89.7% |
| 5015520 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.58 | 47.0 | 3.73e-01 | 87.4% | 90.5% |
| 5033918 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.58 | 46.0 | 3.90e-01 | 87.4% | 93.9% |
| 5018904 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.57 | 47.0 | 3.80e-01 | 88.3% | 85.1% |
| 4948088 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 50.0 | 4.26e-01 | 100.0% | 76.6% |
| 3789933 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.56 | 42.0 | 4.25e-01 | 81.6% | 98.1% |
| 5035736 | 71.1.1.26 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 | 0.56 | 45.0 | 3.91e-01 | 88.3% | 97.1% |
| 4966157 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 48.0 | 3.94e-01 | 94.2% | 90.0% |
| 4991389 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.56 | 49.0 | 3.68e-01 | 100.0% | 68.5% |
| 3438038 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.55 | 40.0 | 3.75e-01 | 78.6% | 68.9% |
| 4961500 | 11.1.1.131 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EB_dh | 0.55 | 49.0 | 3.91e-01 | 100.0% | 86.2% |
| 5017990 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 4.05e-01 | 79.6% | 98.2% |
| 3565621 | 10.32.1.234 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd | 0.54 | 48.0 | 4.12e-01 | 100.0% | 64.8% |
| 3447675 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.53 | 40.0 | 3.87e-01 | 79.6% | 71.3% |
| 3446425 | 11.1.1.558 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6598 | 0.53 | 39.0 | 3.76e-01 | 77.7% | 73.3% |
| 3679489 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.53 | 38.0 | 3.65e-01 | 78.6% | 63.2% |
| 4992294 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.53 | 44.0 | 3.38e-01 | 92.2% | 79.2% |
| 4927853 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 40.0 | 3.75e-01 | 83.5% | 100.0% |
| 3849839 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.52 | 40.0 | 4.04e-01 | 81.6% | 98.0% |
| 4158607 | 71.1.1.5 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF576 | 0.52 | 41.0 | 3.26e-01 | 87.4% | 86.4% |
| 4604481 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.52 | 40.0 | 3.17e-01 | 84.5% | 54.6% |
| 3223402 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.84e-01 | 75.7% | 84.0% |
| 4005087 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.52 | 42.0 | 3.26e-01 | 87.4% | 70.0% |
| 3239309 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.52 | 45.0 | 3.79e-01 | 100.0% | 71.8% |
| 4500128 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.52 | 42.0 | 2.84e-01 | 91.3% | 36.2% |
| 3455907 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.51 | 38.0 | 3.54e-01 | 78.6% | 68.5% |
| 3974176 | 5084.8.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore | 0.51 | 43.0 | 2.85e-01 | 93.2% | 32.9% |
| 4295345 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.51 | 41.0 | 3.69e-01 | 90.3% | 89.7% |
| None | — | 0.51 | 40.0 | 2.47e-01 | 86.4% | 44.6% | |
| 4943783 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 38.0 | 3.62e-01 | 83.5% | 94.7% |
| 3981844 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 2.77e-01 | 92.2% | 34.9% |
| 4349091 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.50 | 41.0 | 2.81e-01 | 92.2% | 35.6% |
| 3519720 | 5084.8.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher_TcfC | 0.50 | 41.0 | 2.75e-01 | 92.2% | 38.5% |
D2
medium
residues 11-115
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18454.8 best | Mtd_N | 28.9 | 1.20e-06 | 29.5% | 81.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.78 | 32.0 | 4.39e-01 | 100.0% | 74.5% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.75 | 31.0 | 4.30e-01 | 100.0% | 78.4% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.59 | 41.0 | 4.59e-01 | 87.6% | 96.2% |
| 2m88A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 39.0 | 4.28e-01 | 74.3% | 89.5% |
| 1x4dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 45.0 | 4.58e-01 | 95.2% | 90.2% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.53 | 42.0 | 3.68e-01 | 87.6% | 67.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3623476 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.66 | 46.0 | 4.81e-01 | 71.4% | 87.4% |
| 3784179 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 45.0 | 4.86e-01 | 70.5% | 91.1% |
| 3739487 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 45.0 | 4.90e-01 | 70.5% | 88.2% |
| 3855055 | 304.9.1.58 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM_2 | 0.65 | 45.0 | 4.59e-01 | 70.5% | 77.0% |
| 3352545 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.64 | 47.0 | 4.92e-01 | 76.2% | 91.6% |
| 3326846 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.63 | 43.0 | 4.54e-01 | 70.5% | 93.7% |
| 3253759 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.62 | 43.0 | 4.18e-01 | 70.5% | 74.8% |
| 3508059 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.61 | 42.0 | 3.98e-01 | 70.5% | 64.8% |
| 3477152 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.60 | 42.0 | 4.45e-01 | 71.4% | 94.4% |
| 3725375 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 41.0 | 3.98e-01 | 70.5% | 67.8% |
| 3337055 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.59 | 42.0 | 4.51e-01 | 74.3% | 95.6% |
| 3914416 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 42.0 | 4.19e-01 | 86.7% | 76.4% |
| 162430 | 304.9.1.17 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF1866 | 0.54 | 42.0 | 4.43e-01 | 90.5% | 96.7% |
| None | — | 0.52 | 46.0 | 2.87e-01 | 100.0% | 22.1% | |
| 3593062 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 45.0 | 4.47e-01 | 100.0% | 91.8% |
| 3704446 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 40.0 | 3.97e-01 | 86.7% | 80.0% |